Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme360945g00001 | ATGCAGCTTGCAATTTCTACTGCACTTCCCATGGCACTTCAAGCTGCAATTGAACTTGGTGTATTTGAAGTGTTGCAAAATGCTGGTAAAGGTGCTCGACTCTCTGCCGATGACATTGTTTCCTGTCTTTCCAAAATTAACAATCCCGAAGCTTCCAAAATGCTAGATCGCATTCTTGCTTTTCTATCCTCTCACTCAGTGCTTAA | 206 | 0.4223 | MQLAISTALPMALQAAIELGVFEVLQNAGKGARLSADDIVSCLSKINNPEASKMLDRILAFLSSHSVL | 68 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme360945g00001 | 68 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 68 | IPR036390 | - | |
| Trme360945g00001 | 68 | Gene3D | - | 1 | 68 | IPR036388 | - | |
| Trme360945g00001 | 68 | Pfam | Dimerisation domain | 11 | 62 | IPR012967 | GO:0046983 | |
| Trme360945g00001 | 68 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 68 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme360945g00001 | Trme-Chr360945 | 49 | 254 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme360945g00001 | 1 | 68 | Monolignol Biosynthesis Gene Families | AT5G54160 | 50.000 | 1.48e-12 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme360945g00001 | K13066 | - | tpra:123922925 | 77.7962 |