Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme36049g00001 TTGGAGAGTGAAGAGCCACGCGAGGCAAGTGACGATGAGAGGAGAAGTGCTGTGACTGCCATGGACAACATATTTTCTGTGCTAACCCACTATAGCGAGTTGACGGGAAGATTGGTGTGTAGAAAGAGATGCAGCACTCCTGACGTGGGTCTTCTTAGTTCGTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGTTTATGCCAGTGATGCCTTCATGAAATTGACAGGTTATGCGAGAGACGAGGTATTGGGCCGCAACTGTAGATTTTTAGGTGGAAGAAATACCGATGACTCAACTCTACATCTGATAACAGAAAGCATAAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATCTCACCTGTTCGGGATGCTTCTGGAAAGGTAATTTTGATGAGCTATTTCTTAGCTGAAGTATAA 507 0.4162 MESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSTPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYARDEVLGRNCRFLGGRNTDDSTLHLITESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVILMSYFLAEV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme36049g00001 168 CDD PAS 75 168 IPR000014 -
Trme36049g00001 168 PANTHER PROTEIN TWIN LOV 1 2 159 - -
Trme36049g00001 168 SUPERFAMILY PYP-like sensor domain (PAS domain) 69 161 IPR035965 -
Trme36049g00001 168 Gene3D PAS domain 66 168 - -
Trme36049g00001 168 ProSiteProfiles PAC domain profile. 126 168 IPR000700 -
Trme36049g00001 168 Pfam PAS domain 66 161 IPR000014 -
Trme36049g00001 168 ProSiteProfiles PAS repeat profile. 79 101 IPR000014 -
Trme36049g00001 168 NCBIfam PAS domain S-box protein 79 161 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme36049g00001 Trme-Chr36049 123 1060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme36049g00001 52 168 AGC Kinase Gene Family AT5G58140 40.171 1.23e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme36049g00001 - - gmx:100799855 279.256