LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme35993g00001	ATGGCTCCGGAGCTTTTTGAAGATGGCGGAGTCCATTCTTATGCTTCCGATTTCTGGGCTCTAGGTTGTGTACTATACGAATGTTATGCTGGGAGGCCTCCTTTTGTGGGAAGAGAATTCACTCAGCTTGTGAAATCCATCATTTCAGACCCAACTCCACCTCTCCCTGGAAATCCAAGTCGGCCTTTTGTCAATTTAATAAACTCTCTTTTGGTCAAAGATCCGGCTGAAAGAATACAGTGGCCTGAGCTTTGTGGGCATGCCTTTTGGAAAACCAAATTCACTCCAGTGCCTCTTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNTCAGAACATAATGGAGATAAGTCTTCTCAAAACAGAACCCCTCCCAAATATCGTGAAAAAGACGTGAAAGGGGTGCTAAAGAAGGATGAAAACTCTGGTTTAGCATCAAGAGGCATTGAGACACCAACAAGAGCAACACCAAATAGTCACAGAACTCAGACAAAGGGTTCTGGCAGAACACTGCAGAAAGATCCTTCAAATACTAAAAAAGGTTTGAATCTTTTGAGACTGTCAAGAATAGCAAAATCAAATTTACAAAAAGAAAATGAGAAAGAAAACTATCGACGCCCCTTGCCCAATGGCTCTGAGAAGGATGCCGATGTTAAAATTGAGAATACTGACATGGAACTTGATTTTAATGAGAATAGTGAAGAGGATGCACTTGAAGAAACTGATGGTTCTGAACATACACCTTCTGTGCCCAGTGCAAAAATGGAGAATAATTTGCAGAATCAAGGAAAAGCAGAGGACACTGAAAATGATACACACCAGTTGGACACTCCATCTGTGACTACTCCTGCCTCAGATGATTCGAGGTCATTTGATCACGAGTCAACTCCTGACCGTTCTGACATATCTGCTATTTCTCCAAGTGTGAGCCCTCTAGTGAAAAAACAGAGGCTTAAAGGAGACTTAGGATCTGGCCTTGACTCTGATTCTTCTAGATCGTCTAACGACTTCTCCCAGGTTATTTGGCACCCATCTGATCTCTCAGTCAGACCTGTAATGCCCAG	1082	0.4085	MAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAFWKTKFTPVPLXXXXXXXXXXXXXXXXXSEHNGDKSSQNRTPPKYREKDVKGVLKKDENSGLASRGIETPTRATPNSHRTQTKGSGRTLQKDPSNTKKGLNLLRLSRIAKSNLQKENEKENYRRPLPNGSEKDADVKIENTDMELDFNENSEEDALEETDGSEHTPSVPSAKMENNLQNQGKAEDTENDTHQLDTPSVTTPASDDSRSFDHESTPDRSDISAISPSVSPLVKKQRLKGDLGSGLDSDSSRSSNDFSQVIWHPSDLSVRPVMP	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme35993g00001	360	Gene3D	Transferase(Phosphotransferase) domain 1	1	98	-	-
	Trme35993g00001	360	MobiDBLite	consensus disorder prediction	199	232	-	-
	Trme35993g00001	360	SUPERFAMILY	Protein kinase-like (PK-like)	1	91	IPR011009	-
	Trme35993g00001	360	MobiDBLite	consensus disorder prediction	152	189	-	-
	Trme35993g00001	360	MobiDBLite	consensus disorder prediction	101	360	-	-
	Trme35993g00001	360	MobiDBLite	consensus disorder prediction	128	150	-	-
	Trme35993g00001	360	ProSiteProfiles	Protein kinase domain profile.	1	90	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme35993g00001	360	MobiDBLite	consensus disorder prediction	233	247	-	-
	Trme35993g00001	360	MobiDBLite	consensus disorder prediction	251	271	-	-
	Trme35993g00001	360	PANTHER	SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED	1	360	IPR044591	GO:0000911\|GO:0000914\|GO:0008017
	Trme35993g00001	360	MobiDBLite	consensus disorder prediction	332	348	-	-
	Trme35993g00001	360	Pfam	Protein kinase domain	1	89	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme35993g00001	1	91	AGC Kinase Gene Family	AT3G25250	40.659	4.19e-12	65.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_ULK4	Trme35993g00001		Pkinase	7.8e-12	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme35993g00001	K17545		-	gmx:100777288	546.969