Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3595g00001 ATGAGGTCAACTCGACTGGGACGGGGACATGCGGTTTGCTCTGATTGTGATGGGGGATTTGTTCAAGATCTCGATGATATGGTCCATGCTAGCTATGGAGCGGACAGCATTGAGGAACTAATTCCCGAACACGGTCCAAGGTTTACTGCTCCTTTGTTAATATATGGTGGCCAAATTCCACACAGGTTTTCTAGACAAGGTGGCATTGATGCTCTCTTTAGAGGGACTCCAGGAACTGGTGTGGCGATAGGTAACTCGGTTAACTATTTTACTGGTCCTGGAGTAGAAGAACTATTTGAACAGATTTCGGCTAATGACCGGCCAGGCCCCCCACCTGCATCTCGGTCCTCTATAGATGCAATTCCTATTGTGAAGATCGCGTCGAAGCATCTTCGATCAGATCCACACTGTCCAGTATGCCAAGATAAATTTGAGCTTGGGTCTGATGCAAGACGAATGCCATGTAAGCATATGTTTCACTCAGATTGTATTATACCGTGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGTCAAGAATTGCCACAAAATAGTAGAAGNNNNNNNNNNANNNNNNNNNNANNNNNNNCTTTCGGCTCTTGA 603 0.4428 MRSTRLGRGHAVCSDCDGGFVQDLDDMVHASYGADSIEELIPEHGPRFTAPLLIYGGQIPHRFSRQGGIDALFRGTPGTGVAIGNSVNYFTGPGVEELFEQISANDRPGPPPASRSSIDAIPIVKIASKHLRSDPHCPVCQDKFELGSDARRMPCKHMFHSDCIIPWLVQHNTCPVCRQELPQNSRXXXXXXXXXXXFGS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3595g00001 200 SMART ring_2 137 177 IPR001841 -
Trme3595g00001 200 FunFam E3 ubiquitin-protein ligase RING1-like 100 184 - -
Trme3595g00001 200 SUPERFAMILY RING/U-box 117 184 - -
Trme3595g00001 200 Pfam Ring finger domain 136 178 IPR001841 -
Trme3595g00001 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 184 IPR013083 -
Trme3595g00001 200 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Trme3595g00001 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3595g00001 Trme-Chr3595 1526 2128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3595g00001 84 186 C3H Transcription Factor Family AT5G01980 40.000 3.88e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3595g00001 K11982 - fve:101311822 257.299