Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35949g00001 GTTCTTCTGTTTTCTGCTACGTTTAATGACATTGTCAAGAATTTTGTTACAAGGATTGTTGAGAAGAAGGAGCATAATAAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCAGTGAAGCAGTACAAAGTTCGTGTTCCTGATGAACTCGAGAAGATTGAAGTGATTAAAAATTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAGTAGTGCAAAAATGTTGCATAAGGCTCTTGTTGATTTAGGCTATGAGGTTACATCCATACAAGGTGCTCTTGAACATGACGAGAGAGACAAGATTGTCAAGGAGTTTAAAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAACTATGATCTTCCACTGAAGTACGCTGCTGAGTATGCCCGTGGCCGTGAACATGAGCCTGATTTTGAGGTGTATTTACATAGGGTTGGTAGGGCTGGGCGATTTGGGCGCAAGG 538 0.3978 VLLFSATFNDIVKNFVTRIVEKKEHNKLFVKKEELSLDAVKQYKVRVPDELEKIEVIKNYIFEIGENVGQTIIFVRTRSSAKMLHKALVDLGYEVTSIQGALEHDERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKYAAEYARGREHEPDFEVYLHRVGRAGRFGRK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35949g00001 179 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 56 179 IPR001650 -
Trme35949g00001 179 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 179 - -
Trme35949g00001 179 Pfam Helicase conserved C-terminal domain 53 177 IPR001650 -
Trme35949g00001 179 CDD SF2_C_DEAD 40 179 - -
Trme35949g00001 179 Gene3D - 33 179 IPR027417 -
Trme35949g00001 179 SMART helicmild6 82 177 IPR001650 -
Trme35949g00001 179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 178 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35949g00001 Trme-Chr35949 50 681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35949g00001 1 179 Eukaryotic Initiation Factors Gene Family AT3G13920 37.705 2.35e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35949g00001 K18655 - qsa:O6P43_010208 283.878