LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme35943g00001	ATGACTGGAGATGGAGTAAATGATGCCCCAGCATTGAAGAAAGCAGATATTGGAATAGCTGTGTCAGATGCTACAGATGCTGCAAGAAGTGCTGCTGATATAGTCTTAACTGAGCCTGGCTTAAGTGTTATTATTAGCGCTGTGTTAACTAGCCGAGCTATATTTCAAAGGATGAAAAATTATACAGTTGAGTATGCAAACTCTTCTTTTCCTCTATATTATCATATAAGAAATCTATCTTGCTAG	246	0.374	MTGDGVNDAPALKKADIGIAVSDATDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTVEYANSSFPLYYHIRNLSC	81

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme35943g00001	81	SUPERFAMILY	HAD-like	1	62	IPR036412	-
	Trme35943g00001	81	NCBIfam	HAD-IC family P-type ATPase	1	72	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme35943g00001	81	PRINTS	P-type cation-transporting ATPase superfamily signature	2	21	-	-
	Trme35943g00001	81	PRINTS	P-type cation-transporting ATPase superfamily signature	25	37	-	-
	Trme35943g00001	81	Pfam	haloacid dehalogenase-like hydrolase	3	37	-	-
	Trme35943g00001	81	PANTHER	CALCIUM-TRANSPORTING ATPASE	1	63	-	-
	Trme35943g00001	81	PRINTS	H+-transporting ATPase (proton pump) signature	33	58	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme35943g00001	81	PRINTS	H+-transporting ATPase (proton pump) signature	2	18	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme35943g00001	81	Gene3D	-	40	71	-	-
	Trme35943g00001	81	Gene3D	-	1	39	IPR023214	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme35943g00001	Trme-Chr35943	276	521	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme35943g00001	1	68	Primary Pumps ATPases	AT3G42640	92.647	2.70e-35	124

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme35943g00001	K01535		-	csin:114304476	112.464