Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme359337g00001 AATGAACAAAAGCTAGCTTCGATTTTCGAGAAATTGGAGATTCGTGATTCTTCAAGCTGTAGAAGTGAAATTGAGAATCTGCAAGAAGAAATTCAGAATCGAAACGAAGAACAATCGAAATCTGAGATCGTTGCTTTGATCGGACTCGTTCGTTATGCGAAGTGTGTTCTCTTCGGAGCATCAACGCCGTCGTCGAAAAATGAGACTCTACGGCGGAATCAGTCGTTGGAGATTGTTGTTCCGGCGGATTACCGGTGTCCGATAAGTCTTGAACTGATGCGTGATCCTGTCGTCGTGGCAACAGGACAGAC 311 0.4502 NEQKLASIFEKLEIRDSSSCRSEIENLQEEIQNRNEEQSKSEIVALIGLVRYAKCVLFGASTPSSKNETLRRNQSLEIVVPADYRCPISLELMRDPVVVATGQT 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme359337g00001 104 Coils Coil 17 44 - -
Trme359337g00001 104 ProSiteProfiles U-box domain profile. 79 104 IPR003613 GO:0004842|GO:0016567
Trme359337g00001 104 SUPERFAMILY RING/U-box 75 104 - -
Trme359337g00001 104 PANTHER U BOX DOMAIN-CONTAINING 4 104 - -
Trme359337g00001 104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 104 IPR013083 -
Trme359337g00001 104 Pfam U-box domain 80 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme359337g00001 Trme-Chr359337 10 320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme359337g00001 1 104 U-box Gene Family AT5G01830 55.238 6.81e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme359337g00001 - - tpra:123922727 200.29