Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3576g00001 ATGGCGGGTTGCTTGACTGATTTGGCGAAGACATATGTGGAAAAATTGATAAATGGGGCAATAGCAGAGACACGTCCTGTATTTTGCTTCACATGCATTGCTAATGAATTCGAAGAAGAAAAGGTTAGGGGAAAGGAGTTGGCAAATAAGATGGAGGAGATTAAACGATTAACAGAAAAGGGAGAGAAACTGGAAAACATTGAACTCCCTCGCCGTCTTCCAGATGTTGAACGTTATTCATCTGAGTATTACATTGCTTTTAAAAGCAGAGAGTCAAAATACAAAGAACTATTGGATGCACTAAAAGATGACAACAACTATATAATCGGATTGCAAGGGATGGGAGGCACCGGAAAAACTACATTGGCCAAAGAAGTGGGTAAAGAGCTAAAGCAATCTGAACAATTCTCTCATGTCATTGACACAACTGTGTCGTTTAATCCTGATATAAAAAAAATTCAAGATGATATTGCTGGACCTTTAGGACTGAAATGGGAGGACTGTAATGACTCAGACAGACCCAAAAAACTGTGGAGCAGATTAATAAATGGTGAGAAAATTCTTCTAATAATGGATGATGTGTGGGATCGAGATATACCTCTTGATTTTGATCTAATAGGAATTCCAAAACGAGACAATCACAAAGGTTGCAGAATTCTTATAACCACGCGCAATAAACGAATATTCAACAAAATGGATTGTGATAAGAACATTGAATTGGAGCTCTTATCTGAAGAAGAATCATGGACCATGTTCAAAAGGTATGCTGGTATAAGTGACAGTTCTTCAAAAAATTTGATCAGTAAGGGACGCAAAATTGCTAACGAATGCAAACGATTACCAGTTGCAATTGCAGTTATCGCCAGCAGTTTAAAGGGCCAACAACTTCGCAAGCATGAGTGGGATGCGACCTTAAAATCCTTGAAGAAGCCTGTGTCCATGCATGGTGTTGATGATTATTTGGTGGGAATTTATAAATGTTTGAAGATTAGCTATGATTATATGAAGGATGAAAAAGCCAAGGGATTGTTTCTCTTATCTTCTGTATTCCCAGAAGATAAAGAAATCCCTATTGGAGTTCTAACTAGACTTGGCATTGGAACAGGCCTTCTTGGAGAAGATTATGGAAGCTACGATGATGCTCGAAACCAAGTAGTTGTAGCCAAAAATAAACTCATAGATTCTTGTTTGTTGGTGGAGGTTGGTGAAAGACTTGTAAAAATGCATGATTTGGTTCGTGATGCAGCTCAATGGATAGCAAACAAAGAGATTCGAGGTGTAAATTTGTCTAACAAAGATCAAAAATCATCGGTTGAAAGGGAAAAGAATATTAAATATTTGTTTTGTGAAGGGAAGGACATGGATTTGTTTTCCTGTAAGTATGATGGTTCCAAACTGGAGACTCTCATTGTCAACATGGATAGAGATGAAGACCACAAATGTACGGAAGTCCCAAATTCTTTCTTTGAAAATATTGTTAAGCTTCGAGTTTTATACTTTTCAGCTAATGGCAAACAACCTCTATCATTGCCACATTCAATACAGTCATTGGCGAATATTCGATCTATGTTGATTGAAGAAGTGGATTTAGGTGACATCTCTGTTTTGGGAAACCTGCAAAGTCTTGAGACTCTTGACTTGGTTAATTGCACAATCAATGAATTGCCACACAAAATTACAAAATTGGGGAAATTTAAATTGTTAAACTTGGGAAGATGTGAAATTAGAAGGAATAATCCATTTGAGGTTATTGAAAGATGCTCAGCACTTGAAGAATTGTATTTCGATGACAGTTTCAACAGTTTTTGTCTAGAAATAACCTTACCTGAGTTGCAAATTTATCGTATTCTTAAAGAGTGGGATGTGATGAATGGTTCATTATCAAAATATGTGTCTTTTTATGCAGTTACAGTGTCTCATTGA 1923 0.3677 MAGCLTDLAKTYVEKLINGAIAETRPVFCFTCIANEFEEEKVRGKELANKMEEIKRLTEKGEKLENIELPRRLPDVERYSSEYYIAFKSRESKYKELLDALKDDNNYIIGLQGMGGTGKTTLAKEVGKELKQSEQFSHVIDTTVSFNPDIKKIQDDIAGPLGLKWEDCNDSDRPKKLWSRLINGEKILLIMDDVWDRDIPLDFDLIGIPKRDNHKGCRILITTRNKRIFNKMDCDKNIELELLSEEESWTMFKRYAGISDSSSKNLISKGRKIANECKRLPVAIAVIASSLKGQQLRKHEWDATLKSLKKPVSMHGVDDYLVGIYKCLKISYDYMKDEKAKGLFLLSSVFPEDKEIPIGVLTRLGIGTGLLGEDYGSYDDARNQVVVAKNKLIDSCLLVEVGERLVKMHDLVRDAAQWIANKEIRGVNLSNKDQKSSVEREKNIKYLFCEGKDMDLFSCKYDGSKLETLIVNMDRDEDHKCTEVPNSFFENIVKLRVLYFSANGKQPLSLPHSIQSLANIRSMLIEEVDLGDISVLGNLQSLETLDLVNCTINELPHKITKLGKFKLLNLGRCEIRRNNPFEVIERCSALEELYFDDSFNSFCLEITLPELQIYRILKEWDVMNGSLSKYVSFYAVTVSH 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3576g00001 640 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 13 606 - -
Trme3576g00001 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 345 IPR027417 -
Trme3576g00001 640 Gene3D Ribonuclease Inhibitor 415 624 IPR032675 -
Trme3576g00001 640 PRINTS Disease resistance protein signature 537 553 - -
Trme3576g00001 640 PRINTS Disease resistance protein signature 181 195 - -
Trme3576g00001 640 PRINTS Disease resistance protein signature 108 123 - -
Trme3576g00001 640 PRINTS Disease resistance protein signature 277 291 - -
Trme3576g00001 640 SUPERFAMILY L domain-like 407 613 - -
Trme3576g00001 640 Coils Coil 47 67 - -
Trme3576g00001 640 Pfam NB-ARC domain 95 333 IPR002182 GO:0043531
Trme3576g00001 640 Gene3D - 331 414 IPR036388 -
Trme3576g00001 640 Gene3D - 243 330 IPR042197 -
Trme3576g00001 640 FunFam Probable disease resistance protein At1g61300 71 237 - -
Trme3576g00001 640 Gene3D - 61 239 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3576g00001 Trme-Chr3576 61 2340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3576g00001 109 524 WRKY Transcription Factor Family AT5G45050 24.654 1.68e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3576g00001 - - vvo:131629101 859.751