Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35751g00001 ATGAGTTTTATATTTTATCATGGTTTTCAGGTTGATGCTGAATCTAGTAAAGAATTGGAACAGTGGAATGAAATGCTTAAAAATGATGCCGTCAAGCTATGCCAGGAGAACAATTTCAATACAGGATTTTTCGAGGGCAGTGAAAATAACAGTGTCGTTGATGCATATGAACTGAAGGTCAGACTTGAACATATTCTTGAGAGAATTGCATTGATATCTGAGGCTGCAAATACAGAGAAACCATCTGCTGTTACAAGCTATCTGTTCATTGGTGGCGCACTGGCTGCAAGATCTGTATACACTATGCAATACTTGGGAATCACACATATTTTGTGTTTGTGTACAAATGAAATTGGTCAATCCGAAACTCAATTTCCTGATATATTTGAATACAAAAATTTCTCGGTGTGTGACAGTGAAGATTTTAACATCACCACTGTATTTGAAGAAGCGTGTGATTTTATAGATTGTGTTGAACAAAAAGGTCAGAAGATTTTAGTCCATTGCTTTGAAGGGAAAAGCAGAAGTGTTACATTGGTCCTTGCTTACCTAATGCTCAGGAA 563 0.3659 MSFIFYHGFQVDAESSKELEQWNEMLKNDAVKLCQENNFNTGFFEGSENNSVVDAYELKVRLEHILERIALISEAANTEKPSAVTSYLFIGGALAARSVYTMQYLGITHILCLCTNEIGQSETQFPDIFEYKNFSVCDSEDFNITTVFEEACDFIDCVEQKGQKILVHCFEGKSRSVTLVLAYLMLR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35751g00001 187 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 10 187 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trme35751g00001 187 Pfam Dual specificity phosphatase, catalytic domain 94 185 IPR000340 GO:0008138|GO:0016311
Trme35751g00001 187 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 149 187 IPR000387 GO:0016311|GO:0016791
Trme35751g00001 187 CDD DSP 81 187 - -
Trme35751g00001 187 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 79 186 IPR029021 -
Trme35751g00001 187 Gene3D Protein tyrosine phosphatase superfamily 56 187 IPR029021 -
Trme35751g00001 187 ProSiteProfiles Dual specificity protein phosphatase domain profile. 80 187 IPR020422 GO:0006470|GO:0008138
Trme35751g00001 187 SMART dsp_5 80 187 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35751g00001 Trme-Chr35751 217 991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35751g00001 6 187 Protein tyrosine phosphatase (PTP) family AT5G23720 72.131 3.76e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35751g00001 K14165 K17614 gmx:100799468 323.939