Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35712g00001 ATGGCTCCGGCAACCTCATTGCCTTCATCTTCGAAGCTAGCCAACTTCATCCACCGTACACATACACCGCACGACCTCAAGAAGTTGCGGCTGAAGAAGTACAGGTCGATGGCTGATATAATGGCGAGGGCGAGCTACGCGGTGGTGGAAAAAGAGGATTACGGTGGCATCATGTGTGACCAATGTGGCTCCGGTGACAACTCGGAGGAGCTGCTGCTGTGCGACAAATGTGACAATGGTTTTCATATGAAATGTGTGAGACCAATTGTTGTCAGAATTCCGATTGAGTTCACTCAAAAGAAAATTCTAGATTTTTTCGGGATTCGAAGGGTGGATTTCAGAATGAATGTTTCTTCTGCTCAGG 364 0.4753 MAPATSLPSSSKLANFIHRTHTPHDLKKLRLKKYRSMADIMARASYAVVEKEDYGGIMCDQCGSGDNSEELLLCDKCDNGFHMKCVRPIVVRIPIEFTQKKILDFFGIRRVDFRMNVSSAQ 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35712g00001 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 100 IPR013083 -
Trme35712g00001 121 SUPERFAMILY FYVE/PHD zinc finger 48 94 IPR011011 -
Trme35712g00001 121 Pfam PHD-finger 58 89 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35712g00001 30 94 C2H2 Transcription Factor Family AT3G01460 29.730 5.17e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme35712g00001 PHD 1.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35712g00001 K24406 - gmx:100808815 135.961