Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3569g00001 GATAAATGTGATGCATTGTTCATGGATCCAATGAAACATGGCTATCCATGTCTTTCTCTTCATAAGGCTAAGGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGCTCGAATTTGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGGGTTGGGCGCACTTGCTTTGTGGATGTCTAA 261 0.3985 DKCDALFMDPMKHGYPCLSLHKAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELEFVINFDVPNHYEDYVHRVGRTCFVDV 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3569g00001 86 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 82 - -
Trme3569g00001 86 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 86 IPR001650 -
Trme3569g00001 86 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 81 IPR027417 -
Trme3569g00001 86 CDD SF2_C_DEAD 3 81 - -
Trme3569g00001 86 SMART helicmild6 4 82 IPR001650 -
Trme3569g00001 86 Pfam Helicase conserved C-terminal domain 12 81 IPR001650 -
Trme3569g00001 86 Gene3D - 1 82 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3569g00001 Trme-Chr3569 102 362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3569g00001 2 81 Eukaryotic Initiation Factors Gene Family AT3G19760 36.250 1.36e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3569g00001 K12811 - mus:103968834 158.303