Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme356801g00001 AACCTTCCTCTCGCTGTTTCAGCACCATCTGCTTCTGCTACTGCTGCTCCACCTACTTCTCTTGCTCCTGGGTTTAGGTTTCACCCAACTGATGAAGAACTCGTTATCTATTACCTCAAGCGCAAGGTTTCTGGAAAACCCTTTCGATTTGATGCTATTGCTGAAGTTGACATCTATAAGAGCGAACCCTGGGACCTTTCAGGTTACTCTCTCACTTTTCCCTAA 225 0.4578 NLPLAVSAPSASATAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAIAEVDIYKSEPWDLSGYSLTFP 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme356801g00001 74 SUPERFAMILY NAC domain 12 70 IPR036093 GO:0003677|GO:0006355
Trme356801g00001 74 ProSiteProfiles NAC domain profile. 21 74 IPR003441 GO:0003677|GO:0006355
Trme356801g00001 74 Gene3D NAC domain 30 72 IPR036093 GO:0003677|GO:0006355
Trme356801g00001 74 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 68 - -
Trme356801g00001 74 Pfam No apical meristem (NAM) protein 23 69 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme356801g00001 Trme-Chr356801 2 226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme356801g00001 1 67 NAC Transcription Factor Family AT3G10480 73.913 4.06e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme356801g00001 NAM 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme356801g00001 - - tpra:123908634 114.005