Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35608g00001 TTTTCAAAACTGAACCTGAGTTTCTGGGAGATTCTACACAGCTACAAACAGCAACCAGAGTGCAGATCACCCGTTTTTCGTAGTGTATTTGTTGATTGCCCATTGGCAGGCAATAATGATGATGGGCAACAGAAGCGTGTTGGAATTATTACATTTTACAATGACATATTCACTCCATCTGTATGGCCACTGGTGATGGAACTTGTCACTGATGAAGAAACTGTGAAAAGTGACCAATTAGCTGAAGTTGTTAATTCAAAGGATGGCCATCTAGCTCAATGTCTTGTGTCTCCAAAAATAGTACCTTTCCCAAGATTTCCTGTTATGCATCGGGAAAAACGATACCCCACAAAAAATTTACGCGTCTCTCCATTATCATCATCCGAGATCATTATGTTGGGAGCAGTCAGAATAGATGGCATGGTTGAAAAGCTACAACTATCTCAGCAGACAGGAGAGAATGTATACTATCTCTTCCAGCGAATCCTAACTCTACGACCCCATATCTTCTCCGATTTTCATATTGACCAAATCATTTTGTGTTGCTTCCGTGCAGTTGCAAAGGTTTCTCTTTAA 576 0.4045 FSKLNLSFWEILHSYKQQPECRSPVFRSVFVDCPLAGNNDDGQQKRVGIITFYNDIFTPSVWPLVMELVTDEETVKSDQLAEVVNSKDGHLAQCLVSPKIVPFPRFPVMHREKRYPTKNLRVSPLSSSEIIMLGAVRIDGMVEKLQLSQQTGENVYYLFQRILTLRPHIFSDFHIDQIILCCFRAVAKVSL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35608g00001 191 Gene3D - 1 87 - -
Trme35608g00001 191 Gene3D - 107 191 - -
Trme35608g00001 191 Pfam Retinoblastoma-associated protein B domain 129 190 IPR002719 GO:0005634|GO:0051726
Trme35608g00001 191 Pfam Retinoblastoma-associated protein B domain 3 61 IPR002719 GO:0005634|GO:0051726
Trme35608g00001 191 SUPERFAMILY Cyclin-like 2 72 IPR036915 -
Trme35608g00001 191 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 2 129 IPR028309 GO:0006357|GO:0051726
Trme35608g00001 191 SUPERFAMILY Cyclin-like 128 190 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35608g00001 Trme-Chr35608 153 1017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35608g00001 128 190 Core Cell Cycle Gene Families AT3G12280 58.730 7.34e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Trme35608g00001 RB_B 1e-11 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35608g00001 K04681 - gmx:100779266 131.339