Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme355203g00001 CAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAGGGAGAGTGGACGGAAACTGGTTTGCCCCTTAACTCTGCGAGAGTTAAAAAGTGCGGAATTGAATCCTAGTATGGCTTTGCGGAACACTATTGAAGAGTGGACTGCCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGTTCGTTGAATACGGGGAGTCCAGAAAAGGAAACCCTTCAGGCTTTGAGGGCTTATACCAATGATTGTTGA 258 0.4651 QTFEREAIEKWFKECRESGRKLVCPLTLRELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNTGSPEKETLQALRAYTNDC 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme355203g00001 85 SUPERFAMILY RING/U-box 1 59 - -
Trme355203g00001 85 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 79 - -
Trme355203g00001 85 SMART Ubox_2 1 49 IPR003613 GO:0004842|GO:0016567
Trme355203g00001 85 Pfam U-box domain 2 54 IPR003613 GO:0004842|GO:0016567
Trme355203g00001 85 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
Trme355203g00001 85 ProSiteProfiles U-box domain profile. 1 56 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme355203g00001 1 85 U-box Gene Family AT1G76390 60.000 7.25e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme355203g00001 - - gmx:100815928 149.443