Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme3547g00001 | ATGTGGAATCCACTATCATGGGTTATGGAAGCTGCTGCTATTATGGCCATTGCATTGGCCAATGGAGGGGGCAAGCCGGCGGATTGGCAAGATTTCGTTGGTATTGTTGTGTTGCTCATCATCAACTCAACCATTAGTTTCATTGAAGAAAACAATGCAGGCAATGCTGCAGCAGCTTTAATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGAGATGGAAAATGGACTGAGCAAGAAGCAGCAATTTTGGTGCCAGGAGATTTGGTGAGCATCAAGTTAGGAGATATTGTCCCGGCCGATGCTCGTCTCTTGGAAGGAGATCCCCTTAAGATTGATCAATCTGCTCTCACTGGTGAGTCACTTCCAGTTACCAAGAACCCTGGTGATGAAGTCTTCTCTGGTTCCACCTGCAAACAAGGTGAGATTGAGGCTGTTGTCATTGCCACCGGTGTCCATACCTTCTTTGGAAAGGCTGCCCACCTTGTTGATAGCACCAACAATGTTGGTCACTTCCAGAAGGTGTTGACATCAATTGGAAACTTCTGTATCTGCTCCATTGCAATAGGAATGTTGATTGAGATAGTTGTGATGTACCCCATCCAAGAAAGGCCATATAGAGAAGGTATTGACAATTTGTTGGTTCTTCTCATCGGAGGTATCCCGATTGCCATGCCAACGGTTTTGTCCGTGACAATGGCTATTGGTTCTCACCGTTTGTCTCAGCAAGGAGCTATCACCAAGAGGATGACAGCTATTGAGGAAATGGCTGGCATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTCACCCTTAACAAGCTCACTGTTGACAAAAACTTGATTGAGGACGGTCTTCTCTTGGCCGCTGCTAGGGCTTCTAGGGTTGAAAATCAGGATGCTATTGATGCTTCAATCGTTGCGATGTTGGGTGACCCCAAGGAGCGCACAGCTATTACCTACATTGATGATGAAGGAAATTGGCACAGATGCAGCAAGGGTGCTCCTGAGCAAATTATTGAACTTTGTGAACTCAAGGGACAGACTTTGAAAAAGGCCCACCAAGTCATTGATCAGTTTGCTGAACG | 1088 | 0.4642 | MWNPLSWVMEAAAIMAIALANGGGKPADWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDLVSIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAIGMLIEIVVMYPIQERPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEDGLLLAAARASRVENQDAIDASIVAMLGDPKERTAITYIDDEGNWHRCSKGAPEQIIELCELKGQTLKKAHQVIDQFAER | 363 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme3547g00001 | 363 | FunFam | Plasma membrane ATPase | 66 | 150 | - | - | |
| Trme3547g00001 | 363 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 269 | 362 | IPR023299 | GO:0000166 | |
| Trme3547g00001 | 363 | NCBIfam | HAD-IC family P-type ATPase | 35 | 344 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trme3547g00001 | 363 | Gene3D | - | 273 | 363 | IPR023299 | GO:0000166 | |
| Trme3547g00001 | 363 | Gene3D | - | 1 | 83 | - | - | |
| Trme3547g00001 | 363 | Gene3D | - | 124 | 267 | - | - | |
| Trme3547g00001 | 363 | PRINTS | Sodium/potassium-transporting ATPase signature | 5 | 19 | - | - | |
| Trme3547g00001 | 363 | PRINTS | Sodium/potassium-transporting ATPase signature | 256 | 277 | - | - | |
| Trme3547g00001 | 363 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 1 | 258 | IPR023298 | - | |
| Trme3547g00001 | 363 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 265 | 271 | IPR018303 | - | |
| Trme3547g00001 | 363 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 363 | - | - | |
| Trme3547g00001 | 363 | FunFam | Phospholipid-transporting ATPase IC | 260 | 272 | - | - | |
| Trme3547g00001 | 363 | Pfam | E1-E2 ATPase | 65 | 242 | - | - | |
| Trme3547g00001 | 363 | PRINTS | P-type cation-transporting ATPase superfamily signature | 263 | 277 | - | - | |
| Trme3547g00001 | 363 | PRINTS | P-type cation-transporting ATPase superfamily signature | 113 | 127 | - | - | |
| Trme3547g00001 | 363 | SUPERFAMILY | Calcium ATPase, transduction domain A | 66 | 163 | IPR008250 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme3547g00001 | Trme-Chr3547 | 1 | 2182 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme3547g00001 | 1 | 363 | Primary Pumps ATPases | AT2G07560 | 83.805 | 0.0 | 629 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme3547g00001 | K01535 | - | jre:109001016 | 630.943 |