Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35423g00001 TATGAAAAAGGGAACTCAGAAGGTCCTAATGCGATGAAACATTACACATTCGAAATTGTTGTGAATTCCTTGTACCCGTATGTATCAAAAGAGGTCTTGAGAAGACATGGAGAAGAATGTCATGGAAAATTTGCGGAGTTGAAAGTGGGAGGAAAATCGTGGTCTGTAAGATTGTATCGTCAGCAAAAGGGTATTAGATTTTATAAAGGTTGGAGTAAGTTTAAGGAAGAATGCATAGTGGGGATTGGAGATACTTGTTTCTTTGAGTTGATTGATGAGAAAAAACTTGTGTTTAAAGTTTCATTTGAAAGAAAGAAGTAA 321 0.3551 YEKGNSEGPNAMKHYTFEIVVNSLYPYVSKEVLRRHGEECHGKFAELKVGGKSWSVRLYRQQKGIRFYKGWSKFKEECIVGIGDTCFFELIDEKKLVFKVSFERKK 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35423g00001 106 Pfam B3 DNA binding domain 28 102 IPR003340 GO:0003677
Trme35423g00001 106 SUPERFAMILY DNA-binding pseudobarrel domain 21 101 IPR015300 -
Trme35423g00001 106 SMART B3_2 17 104 IPR003340 GO:0003677
Trme35423g00001 106 CDD B3_DNA 27 104 IPR003340 GO:0003677
Trme35423g00001 106 ProSiteProfiles B3 DNA-binding domain profile. 51 106 IPR003340 GO:0003677
Trme35423g00001 106 Gene3D - 2 106 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35423g00001 44 101 REM Transcription Factor Family AT1G49480 36.207 1.25e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme35423g00001 B3 9.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35423g00001 - - tpra:123892609 111.694