Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme354201g00001 AAGCCTAATATGGTTGTTGCCAAGGATGGTACTGGCCAATTTAAAACCATTAAGGAAGCTCTTAAACAGTGCCCTAAGGGAAACGAAGGAAGATATGTTATATACGTTAAGGCTGGTGTCTATGACGAGCAGATGATCACTGTCCCTAAAGAGTGTCGTTACTTGCTTATGTACGGTGATGGCCCTCTAAAGACCGTTATCACCGGTAATAAGAGCAAAGCCAAGGATAATATCGAGATCTTGGAGAACGCCAGCTTTT 259 0.4286 KPNMVVAKDGTGQFKTIKEALKQCPKGNEGRYVIYVKAGVYDEQMITVPKECRYLLMYGDGPLKTVITGNKSKAKDNIEILENASF 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme354201g00001 86 Gene3D - 1 86 IPR012334 -
Trme354201g00001 86 PANTHER PECTINESTERASE 2 72 - -
Trme354201g00001 86 SUPERFAMILY Pectin lyase-like 2 73 IPR011050 -
Trme354201g00001 86 Pfam Pectinesterase 3 85 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme354201g00001 Trme-Chr354201 64 322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme354201g00001 1 86 Carbohydrate Esterase AT2G26450 54.651 8.81e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme354201g00001 K01051 - gmx:100781507 108.612