Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35389g00001 CTTCTCATCTTTTTAGGCCATGGAGGATCACGGACTGCAGAATACCTGAAAAATAATTTATTCAAGAACTTGAGTAGTCATCCCGACTTTATCAAAGACACAAAGACAGCTATTGTTGAAGCATTTAAACAAACAGACGTTGATTACCTCAATGAGGAAAAGGGACATCAAAGGGATGCTGGGTCCACTGCATCAACAGCTTTGTTGTTGGGCGACCGAATTCTTGTTGCAAATGTTGGTGATTCCCGAGTAGTTGCATCTAGAGCTGGTTTAGCTGTTCCTTTATCTGTTGATCACAAACCTGATAGATCTGATGAGCGTCAAAGGATTGAACAGGCTGGGGGATTTGTTATCTGGGCAGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTCGGAGACAAGCTTCTTAAGCCGTATGTTGTTGCTGACCCAGAAATTCAGGTTGGCTAA 462 0.4372 LLIFLGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDVDYLNEEKGHQRDAGSTASTALLLGDRILVANVGDSRVVASRAGLAVPLSVDHKPDRSDERQRIEQAGGFVIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQVG 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35389g00001 153 CDD PP2Cc 3 152 IPR001932 -
Trme35389g00001 153 PANTHER PROTEIN PHOSPHATASE 3 152 IPR015655 GO:0004722|GO:0006470
Trme35389g00001 153 SMART PP2C_4 1 153 IPR001932 -
Trme35389g00001 153 Gene3D - 1 152 IPR036457 -
Trme35389g00001 153 Pfam Protein phosphatase 2C 3 151 IPR001932 -
Trme35389g00001 153 SUPERFAMILY PP2C-like 4 152 IPR036457 -
Trme35389g00001 153 ProSiteProfiles PPM-type phosphatase domain profile. 1 153 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35389g00001 Trme-Chr35389 2 942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35389g00001 3 151 PP2C-type Phosphatase Gene Family AT1G43900 79.195 6.90e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35389g00001 K17506 - gmx:100776867 281.182