Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme35377g00001 | GGCTGCCTACTTGTGCGCCAGAATTTCTTCCACAATGATCCCAAGAATTTTGCTGATGTGGGGGGTGGTGTTCTAGGCTGTAGAGGATTCCATTCAAGTTTTAGAGCTACACAAAGCGGGCTATCTCTTAACATAGATGTCTCAACTACTATGATAATTCAACCTGGCCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTGAGAGATCCTTTTAGTCTTGACTGGACAAAGGCCAAAAGGACACTAAAAAATCTGAGGGTTAAAACTCATCCATCCAATCAAGAGTTTAAAATTTGTGGACTCAGTGAAGTCCCATGCAAAGAGCTTACTTTTACTTTGAAGAAAAGGGATGGGGATGGTACTGAAGAAATGACTGTTTTGGACTATTTTACTAATGTCCGGAAGATAGATCTGCGCTACTCTGCTGATCTTCCATGTATTAATGTTGGCAGGCCTAAACGGCCAACATATTTCCCGATTGAGCTGTGTGAATTGGTATCGTTACAACGATATACAAAAGCTCTGTCTACCCTTCAAAGGGCGTCCTTGGTGGAGAAATCCAGACAGAAGCCACAAGAGAGGATGAGAATTTTGTCGGATGTAAGTTGTCTTGCCTAG | 621 | 0.4203 | GCLLVRQNFFHNDPKNFADVGGGVLGCRGFHSSFRATQSGLSLNIDVSTTMIIQPGPVVDFLISNQNVRDPFSLDWTKAKRTLKNLRVKTHPSNQEFKICGLSEVPCKELTFTLKKRDGDGTEEMTVLDYFTNVRKIDLRYSADLPCINVGRPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMRILSDVSCLA | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme35377g00001 | 206 | ProSiteProfiles | PAZ domain profile. | 80 | 168 | IPR003100 | GO:0005515 | |
| Trme35377g00001 | 206 | FunFam | Protein argonaute 7 | 50 | 172 | - | - | |
| Trme35377g00001 | 206 | Pfam | Argonaute linker 1 domain | 5 | 53 | IPR014811 | - | |
| Trme35377g00001 | 206 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 4 | 198 | - | - | |
| Trme35377g00001 | 206 | Gene3D | paz domain | 49 | 172 | - | - | |
| Trme35377g00001 | 206 | Pfam | PAZ domain | 59 | 184 | IPR003100 | GO:0005515 | |
| Trme35377g00001 | 206 | SUPERFAMILY | PAZ domain | 50 | 201 | IPR036085 | GO:0005515 | |
| Trme35377g00001 | 206 | CDD | PAZ_argonaute_like | 55 | 167 | - | - | |
| Trme35377g00001 | 206 | SMART | DUF1785_2 | 3 | 55 | IPR014811 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme35377g00001 | Trme-Chr35377 | 82 | 1084 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme35377g00001 | 5 | 197 | Eukaryotic Initiation Factors Gene Family | AT1G48410 | 35.000 | 4.35e-31 | 117 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme35377g00001 | K11593 | - | gmx:100820376 | 358.221 |