LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme3525g00001	ATGGTGATGATGAAACTTGTTTTGGTTGTTGTTACTGTTATTACATTTTTGGTGAATGTGTCATTTGCCTTATACACACCTCATGATAATTACCTAATTGCTTGTGGTTCATCCAAAAGTATAAACTTTCAAGATCGTGTTTTCGTTCCCGATTCACAGCATTCATCACTTGTGTTGAAAACTGGAAATTCAATTGTTGTTGCTAGTTCTAATTCAAGTGTTGTTCCATCTCCAATTTATCAATCAGCTAGGATTTTCAGTGAGAAAGGTTCTTATAGATTTGATGTTCAACAAGGTAGGCATTGGATTAGGTTATATTTTTATCCTATTCCAAACACTAGCCATAATTTGACTTCAGCTTCTATAACAGTTGTTAGTGATGATTTTGTTTTATTAAGCAACTTCACTTTTAGAAACTATAGTGGTTCTTATATGTTTAGGGAGTATGCTATCAATGTGACCTCTGATACTTTGACTGTAACCTTTATTCCTTCGAATGGTTCAGTTGCTTTTGTTAATGCAATTGAAGTTGTGTCGATGCCAGATGACTTGTTTGTCGATCAGGCATTGTCGCTTAGTCCATTAGCCCCTTTTAGTGGCCTTTCGGAACTTGCTTTTGAAACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNGTGAACAGCTCGGTTACTAATGTGTCTGCTAGCCCTTCAAGCATTAGGTATCGACCGGGCGTTACTGCTGAGACGGCACCTAATTGGGTTTATGCCACTGCTGAAGCAATGGGGGATGCAAATGTTGCCAATTCAAATTTCAACATTACTTGGGTCTTTGATGTGGATCCAAGTTTCTCCTATTTTGTTCGGCTTCACTTTTGCGATATTATTAGCAAGGCAATGAATACGTTAGTTTTCAATGTATTCATAAATACTGATATAGCTATTGGAAGCCTTGACCTATCGTCTTTGACTAATGATTTGGCTTTGCCTTACTATAAGGACTTTGTTTCCAATGCCTCATCAGATAACACTTTGACGGTAAGCGTTGGTCCTGATACAATGGCGGACATTACAAATGCAACTATGAATGGATTGGAGATAATGAAAATCAGCAATGCATTGAAGAGCTTGGATGGAYTTTCTTCAGTCAAGAGTCTTCTTCCTAGTTCAAAATCAAACAAGAACAAGATAGGAATCATTGTTGGTTCCGCCGCTGGTGCTTTTGTTGCCTTGGCTTTTATTGGTTTGTGTTTTTGCTTATTGGCGAAAAGAAATTTGAAATCTCCTCAAGAGGGTGGTCATTCATGGCTGCCATTGCCCTTATATGGAAATTCTCAGACCATGACGAAAATGTCAACAACTTCACAGAAGAGTGGAGGAACTGCAAGCTTCATTTCTTCAACGAATCTTGGACGGTTCTTCACTTTCCAAGAAATCCTAGACGCAACCAACAAATTTGATGAGAAGCTTCTTCTTGGTGTTGGTGGTTTCGGCAGGGTTTATAGGGGAATCCTTGATGATGGTACCACTGTAGCTGTTAAAAGGGGAAATCCAAGATCTGAACAAGGTCTTGCTGAATTCAGAACGGAAATTGAGATGTTATCAAAGCTTCGCCATCGTCATCTTGTGTCTCTAATTGGTTATTGTGATGAGAGGTCAGAAATGATTCTTGTCTATGAATATATGGCTAATGGTCCCCTCAGGAGTCATTTGTATGGAACTGATCTACCACCTCTATCGTGGAAACAACGACTCGATATTTGCATCGGAGCAGCAAGAGGACTTCATTATCTCCACACTGGTGCATCGCAAAGCATAATTCATCGAGATGTAAAGACAACAAACATCCTTTTAGATGATAGCTTTGTTGCTAAAGTTGCTGACTTTGGCCTCTCCAAAACCGGTCCCGCGCTTGATCAGACTCACGTGAGCACGGCTGTTAAAGGTAGTTTCGGTTATCTTGATCCAGAATACTTTAGAAGGCAACAACTCACAGAGAAATCAGATGTTTATTCATTCGGAGTAGTTTTAATGGAAGTGCTATGCACAAGACCGGCTTTGAACCCTGTCCTTCCTAGGGAACAGGTTAATATAGCCGAGTGGGCGATGAATTGGCAGAAGAAGGGAATGCTCGATCAAATCATGGATCAACAACTTGTCGGGAAGGTCAATCCTGCTTCCCTCAAGAAGTTCGGGGAGACAGCGGAGAAGTGTTTGGCTGAGTATGGAGTGGATAGACCATCTATGGGAGATGTTTTATGGAATCTTGAATATGCTTTGCAGCTCCAAGAAACCTCATCAGCACTCATGGAACCAGAAGATAACAGTAC	2369	0.3875	MVMMKLVLVVVTVITFLVNVSFALYTPHDNYLIACGSSKSINFQDRVFVPDSQHSSLVLKTGNSIVVASSNSSVVPSPIYQSARIFSEKGSYRFDVQQGRHWIRLYFYPIPNTSHNLTSASITVVSDDFVLLSNFTFRNYSGSYMFREYAINVTSDTLTVTFIPSNGSVAFVNAIEVVSMPDDLFVDQALSLSPLAPFSGLSELAFETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNSSVTNVSASPSSIRYRPGVTAETAPNWVYATAEAMGDANVANSNFNITWVFDVDPSFSYFVRLHFCDIISKAMNTLVFNVFINTDIAIGSLDLSSLTNDLALPYYKDFVSNASSDNTLTVSVGPDTMADITNATMNGLEIMKISNALKSLDGXSSVKSLLPSSKSNKNKIGIIVGSAAGAFVALAFIGLCFCLLAKRNLKSPQEGGHSWLPLPLYGNSQTMTKMSTTSQKSGGTASFISSTNLGRFFTFQEILDATNKFDEKLLLGVGGFGRVYRGILDDGTTVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDSFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMNWQKKGMLDQIMDQQLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNST	790

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme3525g00001	790	Gene3D	Transferase(Phosphotransferase) domain 1	575	788	-	-
	Trme3525g00001	790	FunFam	Receptor-like protein kinase FERONIA	235	385	-	-
	Trme3525g00001	790	SUPERFAMILY	Protein kinase-like (PK-like)	476	770	IPR011009	-
	Trme3525g00001	790	FunFam	Receptor-like protein kinase FERONIA	575	789	-	-
	Trme3525g00001	790	Pfam	Malectin-like domain	33	188	IPR024788	-
	Trme3525g00001	790	Pfam	Malectin-like domain	260	383	IPR024788	-
	Trme3525g00001	790	CDD	STKc_IRAK	505	770	-	-
	Trme3525g00001	790	SMART	serkin_6	499	772	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme3525g00001	790	Gene3D	Phosphorylase Kinase; domain 1	457	574	-	-
	Trme3525g00001	790	FunFam	Putative receptor-like protein kinase	30	181	-	-
	Trme3525g00001	790	ProSiteProfiles	Protein kinase domain profile.	499	772	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme3525g00001	790	Pfam	Protein tyrosine and serine/threonine kinase	504	765	IPR001245	GO:0004672\|GO:0006468
	Trme3525g00001	790	PANTHER	OS07G0166700 PROTEIN	485	776	IPR045272	GO:0004714\|GO:0006468
	Trme3525g00001	790	FunFam	receptor-like protein kinase FERONIA	460	574	-	-
	Trme3525g00001	790	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	619	631	IPR008271	GO:0004672\|GO:0006468
	Trme3525g00001	790	ProSitePatterns	Protein kinases ATP-binding region signature.	505	527	IPR017441	GO:0005524
	Trme3525g00001	790	Gene3D	-	30	181	-	-
	Trme3525g00001	790	Gene3D	-	234	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme3525g00001	Trme-Chr3525	13	2381	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme3525g00001	8	790	Receptor kinase-like Gene Family	AT3G46290	52.278	0.0	779

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Trme3525g00001		PK_Tyr_Ser-Thr	6.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme3525g00001	-		-	gmx:100809700	1211.82