Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35227g00001 ATGGGACGTGTAATTCGTGCCCAACGTAAGGGTGCCGGTTCAGTTTTCAAATCTCACACCCACCACCGCAAAGGTCCAGCTCGTTTCCGCAGTCTCGACTTCGGCGAACGTAACGGTTACCTAAAAGGAGTTGTTACCGACGTTATTCACGATCCAGGTCGCGGTGCTCCACTTGCCAAAGTTACTTTCCGTCATCCATTCCGTTACAAGAAACAGAATGAGCTTTTTGTTGCTGCTGAAGGTTTATATACCGGTCAATTCATTTACTGCGGTAAAAAAGCTACTCTTGTTGTTGGTAATGTTCTTCCTCTTAGATCTATTCCAGAAGGAGCTGTGATTTGTAATGTTGAAGGTCATGTTGGTGACCGTGGTGTTTTTGCTAGAGCTTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGATACCTCTAGAAATGATTGA 450 0.4422 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRND 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35227g00001 149 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme35227g00001 149 PANTHER RIBOSOMAL PROTEIN L2 2 145 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme35227g00001 149 SMART Ribosomal_L2_C_2 96 146 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme35227g00001 149 SUPERFAMILY Translation proteins SH3-like domain 99 142 IPR008991 -
Trme35227g00001 149 Pfam Ribosomal Proteins L2, C-terminal domain 98 140 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme35227g00001 149 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Trme35227g00001 149 Gene3D - 1 86 IPR012340 -
Trme35227g00001 149 FunFam 60S ribosomal protein L2 1 86 - -
Trme35227g00001 149 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Trme35227g00001 149 Gene3D - 90 147 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35227g00001 Trme-Chr35227 161 699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35227g00001 1 147 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.517 2.06e-100 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35227g00001 K02938 - gmx:547677 298.901