Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35188g00001 CCTGGTGAAATAGGTGTACAGTTTGATGACATAGGTGCTCTTGAAGATGTTAAGAAGGCACTTCAGGAACTTGTTATTCTTCCAATGAGAAGGCCTGAGCTTTTCTCTCATGGAAACCTGTTGCGGCCCTGCAAAGGAATATTACTCTTTGGTCCTCCTGGAACCGGGAAAACCCTTCTGGCCAAGGCACTTGCGACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACGTCAAAGGTATTAGGCCGTGTGCTCATATCTTAA 276 0.4565 PGEIGVQFDDIGALEDVKKALQELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKVLGRVLIS 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35188g00001 91 Gene3D - 6 86 IPR027417 -
Trme35188g00001 91 Pfam ATPase family associated with various cellular activities (AAA) 47 86 IPR003959 GO:0005524|GO:0016887
Trme35188g00001 91 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 86 - -
Trme35188g00001 91 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 88 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35188g00001 Trme-Chr35188 64 597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35188g00001 6 86 Calmodulin-binding Proteins AT3G56690 43.210 3.58e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35188g00001 - - thj:104826507 148.673