Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme351869g00001 ATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGATATCGATCCCGCAACTATTCGTAAACCAAAGCGAAGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATTAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAGACAAATTAG 254 0.4016 MKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme351869g00001 84 FunFam BHLH transcription factor 34 84 - -
Trme351869g00001 84 CDD bHLH_AtIND_like 32 84 - -
Trme351869g00001 84 Pfam Helix-loop-helix DNA-binding domain 41 80 IPR011598 GO:0046983
Trme351869g00001 84 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 83 IPR036638 GO:0046983
Trme351869g00001 84 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 84 IPR045843 GO:0003700|GO:0006355
Trme351869g00001 84 Gene3D - 25 84 IPR036638 GO:0046983
Trme351869g00001 84 SMART finulus 37 84 IPR011598 GO:0046983
Trme351869g00001 84 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme351869g00001 Trme-Chr351869 40 293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme351869g00001 1 84 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 83.333 4.11e-46 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme351869g00001 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme351869g00001 - - gmx:100775296 165.622