Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3516g00001 CCTGTTATCCCGATCTACAATGCAAAACCTGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCATCAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGTAATATTGCCGGACAACAATGGTTCTCTCTATGGCGATCTCAAGCGTATTTGCGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTTAAGATTACTAAGCAGTACTTAGCCAATGTGTCTTTGAAGATCAACGTTAAGATGGGTGGTAGAAACACCGTTCTTGTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCGACAATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGGGAAGACTCCAGCCCATCAATAGCAGCTGTAGTAGCGTCGCAAGATTGGCCTGAAGTTACAAAGTATGCAGGCTTAGTTTGTGCTCAACCTCAAAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCGTTTAGAAGGGCAACAGGACAGAAGCCACAAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGACAGTTTTACCAAGTTCTACTATACGAGTTGGATGCAATTCGAAAGGCRTGTGCTTCTTTGGAGCCAAACTATCAACCACCAGTAACTTTCATAGTTGTACAAAAACGACATCATACTCGGTTATTTGCAAACAACCACAGGGACAGAAACAGCACCGATAGGAGTGGAAATATCCTGCCTGGAACTGTTGTTGATACCAAAATCTGTCACCCAACAGAGTTTGATTTTTATCTCTGCAGTCACGCTGGCATCCAGGGTACAAGTCGGCCAGCGCATTATCATGTTCTATGGGATGAAAATAACTTCACAGCAGACGGGATTCAGTCTTTGACAAACAATCTATGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGCTTCTACACGGAGCCAGACCTACAGGAGACTGGCTCCACCGGTGGTCGTGGTTCGAAAACAACACGTGCAGCCGGTGATTGTGGTGTCAAGCCATTGCCAGCGTTGAAGGAAAATGTGAAGAGAGTTATGTTTTATTGTTAG 1197 0.4327 PVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPDLQETGSTGGRGSKTTRAAGDCGVKPLPALKENVKRVMFYC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3516g00001 398 Gene3D - 104 398 IPR036397 GO:0003676
Trme3516g00001 398 Gene3D - 1 101 - -
Trme3516g00001 398 FunFam protein argonaute 10-like 104 398 - -
Trme3516g00001 398 Pfam Piwi domain 36 354 IPR003165 GO:0003676
Trme3516g00001 398 ProSiteProfiles Piwi domain profile. 35 356 IPR003165 GO:0003676
Trme3516g00001 398 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 11 355 - -
Trme3516g00001 398 SUPERFAMILY Ribonuclease H-like 27 356 IPR012337 -
Trme3516g00001 398 SMART Piwi_a_2 35 356 IPR003165 GO:0003676
Trme3516g00001 398 CDD Piwi_ago-like 1 355 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3516g00001 Trme-Chr3516 60 2234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3516g00001 1 398 Eukaryotic Initiation Factors Gene Family AT5G43810 91.479 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3516g00001 K11593 - gmx:100819073 768.074