Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35163g00001 ATGGAGGAAGGTATGGGAGCTGCCTATGGAACAGCAAAGAGTGGTGTTGGTGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTACCTGTTGTTATGGCTGGTGTTTTGGGTATTTACGGTCTTATTATTGCTGTTATTATCAGTACTGGAATTAACCCAAAGGCCAAATCTTATTACCTTTTTGATGGATATGCACATCTCTCCTCTGGTCTTGCTTGTGGACTTGCCGGCCTCTCTGCTGGTATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAACAGCCAAAACTTTTCGTTGGAATGATTCTTATCCTCATCTTTGCTGAAGCTCTTGCCCTTTACGGTCTCATTGTTGGTATTATCTTGTCTTCACGTGCCGGTCAGTCTAGAGCCGAATGA 429 0.4522 MEEGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35163g00001 142 NCBIfam V-type ATPase subunit C 5 98 IPR011555 GO:0033179|GO:0046961|GO:1902600
Trme35163g00001 142 SUPERFAMILY F1F0 ATP synthase subunit C 64 133 IPR035921 -
Trme35163g00001 142 FunFam V-type proton ATPase proteolipid subunit 1 139 - -
Trme35163g00001 142 PRINTS Vacuolar ATP synthase 16kDa subunit signature 7 31 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trme35163g00001 142 PRINTS Vacuolar ATP synthase 16kDa subunit signature 33 57 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trme35163g00001 142 PRINTS Vacuolar ATP synthase 16kDa subunit signature 84 110 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trme35163g00001 142 PRINTS Vacuolar ATP synthase 16kDa subunit signature 111 134 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trme35163g00001 142 CDD ATP-synt_Vo_c_ATP6C_rpt2 66 133 - -
Trme35163g00001 142 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 138 - -
Trme35163g00001 142 Gene3D - 2 139 IPR035921 -
Trme35163g00001 142 Pfam ATP synthase subunit C 74 132 IPR002379 GO:0015078|GO:0033177|GO:1902600
Trme35163g00001 142 Pfam ATP synthase subunit C 4 53 IPR002379 GO:0015078|GO:0033177|GO:1902600
Trme35163g00001 142 CDD ATP-synt_Vo_c_ATP6C_rpt1 5 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35163g00001 Trme-Chr35163 17 968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35163g00001 1 142 Primary Pumps ATPases(2) AT4G34720 98.592 1.68e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35163g00001 K02155 - twl:120005732 240.736