Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35141g00001 AAGGCTACTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAAGACGACAGGCTGTGAATGTGTGGATGGTTGTGCGGAGGAATGTTTTTGTTTCATGAAGAATGGAAATGAGTTTCCATATAGTCAAAGTGGGCTTCTCTTGAAAGGGAGGCCGTTACTTTTTGAATGCGGTCCTTTTTGCCATTGTCCGCCTCATTGTCGTAACCGTGTAACGCAAAAAGGTCTTAAACACAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCTTTAGACCTTATTCAAGCTGGCGCATTCATATGCGAATACACCGGGGTTGTTTTGACTAGGGAGCAAGCACAAATTTTTACCATGAATGGTGATTCATTGATATATCCGAGTCGGTTTGCGGAAAGTTGGGCGGAATGGGGTAATCTATCCTTGATAGACGCTAATTATAAACGTCCGTCGTATCCATCGATTCCTCCTTTAGACTTTGCTATGGATGTATCAAGAATGAGGAATGTTGCTTGCTATATCAGTCATAGCTCAACTCCCAATGTGATGGTTCAATTTGTGCTTTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGACTACGGGGTAGCTGGGGTAGCTGATGAGGAATTGACTGGCAAGCTCGCTATATGCATGTAA 714 0.4328 KATFPQFVFHQSGKTTGCECVDGCAEECFCFMKNGNEFPYSQSGLLLKGRPLLFECGPFCHCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQIFTMNGDSLIYPSRFAESWAEWGNLSLIDANYKRPSYPSIPPLDFAMDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHLMLFAMENIPPLREFSLDYGVAGVADEELTGKLAICM 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35141g00001 237 ProSiteProfiles Pre-SET domain profile. 16 74 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trme35141g00001 237 SMART set_7 77 226 IPR001214 GO:0005515
Trme35141g00001 237 Gene3D SET domain 2 227 IPR046341 -
Trme35141g00001 237 ProSiteProfiles SET domain profile. 77 220 IPR001214 GO:0005515
Trme35141g00001 237 Pfam SET domain 88 220 IPR001214 GO:0005515
Trme35141g00001 237 Pfam Pre-SET motif 8 69 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trme35141g00001 237 PANTHER G9A, ISOFORM B 3 221 IPR043550 GO:0002039|GO:0016279|GO:0042054
Trme35141g00001 237 SUPERFAMILY SET domain 8 221 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35141g00001 Trme-Chr35141 2 715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35141g00001 17 222 Su(var)3-9 homologs AT5G04940 38.389 1.19e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trme35141g00001 SET 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35141g00001 - K11420 gmx:100795514 430.639