Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35039g00001 CGCATAGTCATGGGACTTTTTGGGACCACAGTACCGAAAACTGCAGAAAACTTCCGTGCGCTTTGTACAGGAGAGAAAGGGGTAGGAAGAAGTGGAAAGCCTCTTCATTATAAAGGGAGCGCATTCCATAGGATAATACCAAGCTTCATGGTCCAAGGGGGTGATTTCACCCTTGGTGATGGAAGAGGTGGAGAATCAATCTATGGCGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGGCCAGGTGAGATTATGTACTTTTGTCACTGA 279 0.4552 RIVMGLFGTTVPKTAENFRALCTGEKGVGRSGKPLHYKGSAFHRIIPSFMVQGGDFTLGDGRGGESIYGDKFADENFKLKHTGPGEIMYFCH 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35039g00001 92 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 85 IPR002130 GO:0000413|GO:0003755
Trme35039g00001 92 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 85 - -
Trme35039g00001 92 SUPERFAMILY Cyclophilin-like 1 87 IPR029000 -
Trme35039g00001 92 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Trme35039g00001 92 Gene3D - 1 89 IPR029000 -
Trme35039g00001 92 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Trme35039g00001 92 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 6 21 IPR002130 GO:0000413|GO:0003755
Trme35039g00001 92 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 85 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35039g00001 Trme-Chr35039 506 1011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35039g00001 11 87 U-box Gene Family AT5G67530 50.000 7.38e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35039g00001 K01802 - aew:130794653 169.474