Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme35023g00001 GTTATGGGAGATGGTTTCATAGCTAAAGACATAACCTTTGAGAACACAGCCGGACCACAAAAACATCAAGCTGTGGCTCTCCGTTCCGGCGCTGACCACTCCGTCTTCTACCGTTGCGCTTTCAAAGGCTACCAAGACACCTTATACGTTTACGCCAACCGTCAATTCTATCGCGACTGCAACATCTACGGAACAATCGATTTCATCTTCGGTAACGCAGTTTCCGTCCTTCAAAACTCCAACATCTTCATTAGAAAACCAATGAGTAACCAACAGAACACCGTAACGGCACAAGGGCGTACAGATCCAAATGAAAACACCGGAATCGTGATTCATAACTGTCGCATAACCGCCGCAGGTGATTTGAAACCGGTTCAGGGTTCTGTTAAAAGTTATCTTGGTAGACCATGGCAGAAATATTCAAGAACGGTTGTTATGAAAAGTAA 446 0.4484 VMGDGFIAKDITFENTAGPQKHQAVALRSGADHSVFYRCAFKGYQDTLYVYANRQFYRDCNIYGTIDFIFGNAVSVLQNSNIFIRKPMSNQQNTVTAQGRTDPNENTGIVIHNCRITAAGDLKPVQGSVKSYLGRPWQKYSRTVVMKS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme35023g00001 148 PANTHER PECTINESTERASE 1 148 - -
Trme35023g00001 148 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
Trme35023g00001 148 SUPERFAMILY Pectin lyase-like 1 148 IPR011050 -
Trme35023g00001 148 Gene3D - 1 148 IPR012334 -
Trme35023g00001 148 Pfam Pectinesterase 1 148 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme35023g00001 Trme-Chr35023 660 1105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme35023g00001 2 148 Carbohydrate Esterase AT2G45220 70.748 1.38e-75 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme35023g00001 - - lja:Lj4g3v3099630.1 285.804