Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34g00001 GTTTATACTATTGAGTTCCAAAAACGAGGTCTTCCGCATGCTCATATTCTTATTTTCTTGCAAGCGGCTTATAGAATTGTAAATCCTCATAATATTGACAAGATAATTTCTGCTGAAATTCCTGATCAAGCCAAAGATCCGGAATTGTTTGAAATTGTATCGTCGCTAATGATACACGGTCCATGTGGTCAGCAAAATAAAAATTCCCCATGTATGCATCAAGGGAAATGTTCAAAGTATTATCCCAAAAAATTTGTCCGGAACACAATTATTGACTCTGAGGGCTATCCTGTGTATAGAAGGAGGGATAATGGTGTAGCTATTCAAAGAGGCAAGTACTTTGCTGACAACAGGTTTGTTGTTCCATATAACCCGCATTTATTGTTGAGATATAATGCTCATATAAATGTTGAATGGTGCAATCAATCGCGGTCAATAAAATATTTATTCAAATATGTCAACAAAGGGCACGACAGGGTCACTGCTGGATTTTATCATAGTAGTGATGACAAAAACGGTTCACGGGGTTTTGATGAGATCAAAATGTACTATGATTGTAGATATCTATCCGCATGTGAAGCTGTGTGGAGAATCTTTGTGTTTGATGTGAACTACAGACAGCCTTCCGTTGAGAGACTTGGTTTTCATCTTGAGGGTGAACAATCTGTGATTTTTCCGGACGATGCTTCAATAGAAGAAATTGTCCAAAAGCCATATGCTAAACACACAAAGTTTTTGGCATGGATGGATGCCAACAAACAATATCCTCATGCACGAAATCTGACTTATGCTGAGTTCCCTTCGAAGTTTGTGTGGAAAAAAGATAAGTGTAGATGGAGTCCCCGACAGCGGGGTTTCTCTGTTGGGAGAGGTGCCACTTCTTTCGAAGACATTCGGACAGTCAACAATGTTACATATGACACTTTCAAGGATGCCTGTTTCGCTTTAGGCTTAATGAAAGATGATAGAGAATTCATTTATGCCATTAAGGAAGCGGCCTATTGGGGAGCTGGTAGCTACCTGCGCAAATTATTTGCAGCGTTGTTAGTTTCAGGCCAACTGCATCAACCGTTGACTGTGTGGACTAACACCTGGGAAGATCTCACAGATGACATTCAGCATAGACAGCGTCGCATTCTTGGTCTTGATGGGTTGGTGTTGACTGCTAAACAAAAACAAAGCTATGCCTTGGCTGAAATTGAAGATACTTTGCGTTGCAATGGCAAGAGTCTAGATGACTTCTCTGACATGCCTCGACCGGACCCTGCATTGGTTCGGGATATAGGAAATAGGCTTATTTATGATGAATTAAATTATGATAGGCAAGCATTGTCAAAGGAGCATGCTGCATTGATGTCAACAATGACCTCTGAACAGAGGCGGGTGTATGACAAAATCATCACAAGAGTTCAGAATAATAGACCAGGGTTCTTTTTCCTTTACGGTTATGGAGGTACCGGGAAAACTTACATCTGGAGAGCGCTCTCAGCTGCGATACGTTCAAGAGGTGAAATTGTCTTAGCGGTAGCATCAAGCGGTATAGCAGCCTTGCTGATTCCAGGTGGGCGAACTGCCCATTCTAGATTTGCCATACCTCTAAATATAAATGAATATTCAACCTGTCCAATAGGTAAAGAAGAACCATTGGCTAAACTAATCCGCCGTGCAAAGCTCATTATATGGGATGAAGCCCCTATGATGCACAGGCATTGCTTTGAAGCTGTTGACCGCACTTTCAAGGATATAATGAATGAGCAAAGATATCCATTTGGTGGAAAGGTTGTTGTCTTGGGCGGGGATTTCCGTCAAATTCTCCCCGTCATACCTAAAGGAACAAGATACGAAATTGTTCAGGCTACTATAAACTCCTCTCCTTTATGGCATTGTTGCGAGGTACTCACTCTCACCACAAATATGAGATTGCTAGCAGGTTGTCCAGCTTCTGATGTTGAAAAAAGGAGCTTTTCAGAGTGGATTTTAAGAATTGGTGATGGGACTCTAGGAGACTCGGATGATGAGTACATTAAGATTCAGATTCCACATGATTTATTGATCTCCCCATCTCATGACCCACTCTCCGCCATAGTGGAGAGTACTTATCCAAACCTATTGTCCAATATGAATGATTCGTCCTTTTTCCGTAATAGAGCTGTCTTAGCCCCTAAGAACACTGTTGTTGATACAATCAATGAATATATATTGGAACAAATACCCGGAGAGGATAAAATATACCTGAGTTATGACTCTCCATGTAGTGGTGATTCAGATAATGGTGTTTTTGATGATGTTCATACTGCTGAATTTCTAAACACTATCGTGTCATCTGGGATTCCAAATCATAAGCTGCGGTTAAAAAAAGGGGTCCCTGTGATGTTGATGAGGAATATGGATCAATCAGCAGGACTATGCAATGGCACTAGATTAATAATCACCAGAATGGGGACTTATGTGGTTGAAGGAAGAATTATATCAGGGAGTAATATTGGCGATAAGGTCTACATTCCAAGGCTCTCGCTCATTCCTTCTGACAAAAGACTACCTTTTAAGTTTGAACGTCGACAATTCCCATTAAAAGTTTCTTTTGCCATGACCATAAATAAAAGTCAAGGTCAATCTCTTAAGTATGTTGGTGTCTATCTTCCACAGTCTATTTTCTCGCACGGGCAACTGTATGTTGCGTTGTCTAGAGTTACTTCAAGGGAAGGGTTGAAAATTTTAATATGTGACGACCAAGATATAGAGTGGGACTTACAAGGTCATGCATTGATGCCAAGCACATGCTATGTTGAATTTAATCCAATTGCTACTCGAGCAAAGTTCCCTGCATGTTTCACAAAGGACTTCGGCAGCTTTATAGGAAATTACGTTATTTTGCAAGATCGAGAACGAAACCGAATCCAAGTCTCTGTTAAGAGGAAGAATTGCAGCATATATTTCACAGAGGGTTGGTCTGAAATGGGAGCTTTTTATGGCATAAACACTGGAGGTTGGTTAGTAATTTTATATGTCAATCCTCGCTTTTTCCGTATAAAGGTACTAGACAGATATGGAGCTGAAGTGGCTTATCCTCTGAAAACTCCTCCACATAGTATCATGTTGGTAGGAGGAGGCACCGAGAAATCGCCGGTTCCAATTGACCGATTTGTTGTCCCTCCTACAGAATTCTGCCATGTTCTTGAGAAGACTCTCACATCAGTTGATGTCGAATCGGGTGTTTTGACCCTGCTTTGGAATGGCTTCTGTGAGTATGCACTACCAAAATCCAATACTGATTTAATATTGGTGGACTGGTTGGGGCATACATGGAAATGTAATCTACAATTTGCAAGTCATCTTCCAAATAAGTGTCAGATTTCTGGTCAGTGGCGCAATATATGCAAAGCTCATCAACTGATTGAGGATTGCGTTGTTAAATTCTGCGTCACAGAGATGTCAAACAATAAGACCATTCATTTCAGAATTGCATCTTGCATATCTATACGCACCACTCTAATCGCACCAGCCACTTCTTCAGCATACAAGACATTTTATCAAGTGGAAAATTATTTCATGCTATAA 3558 0.4064 VYTIEFQKRGLPHAHILIFLQAAYRIVNPHNIDKIISAEIPDQAKDPELFEIVSSLMIHGPCGQQNKNSPCMHQGKCSKYYPKKFVRNTIIDSEGYPVYRRRDNGVAIQRGKYFADNRFVVPYNPHLLLRYNAHINVEWCNQSRSIKYLFKYVNKGHDRVTAGFYHSSDDKNGSRGFDEIKMYYDCRYLSACEAVWRIFVFDVNYRQPSVERLGFHLEGEQSVIFPDDASIEEIVQKPYAKHTKFLAWMDANKQYPHARNLTYAEFPSKFVWKKDKCRWSPRQRGFSVGRGATSFEDIRTVNNVTYDTFKDACFALGLMKDDREFIYAIKEAAYWGAGSYLRKLFAALLVSGQLHQPLTVWTNTWEDLTDDIQHRQRRILGLDGLVLTAKQKQSYALAEIEDTLRCNGKSLDDFSDMPRPDPALVRDIGNRLIYDELNYDRQALSKEHAALMSTMTSEQRRVYDKIITRVQNNRPGFFFLYGYGGTGKTYIWRALSAAIRSRGEIVLAVASSGIAALLIPGGRTAHSRFAIPLNINEYSTCPIGKEEPLAKLIRRAKLIIWDEAPMMHRHCFEAVDRTFKDIMNEQRYPFGGKVVVLGGDFRQILPVIPKGTRYEIVQATINSSPLWHCCEVLTLTTNMRLLAGCPASDVEKRSFSEWILRIGDGTLGDSDDEYIKIQIPHDLLISPSHDPLSAIVESTYPNLLSNMNDSSFFRNRAVLAPKNTVVDTINEYILEQIPGEDKIYLSYDSPCSGDSDNGVFDDVHTAEFLNTIVSSGIPNHKLRLKKGVPVMLMRNMDQSAGLCNGTRLIITRMGTYVVEGRIISGSNIGDKVYIPRLSLIPSDKRLPFKFERRQFPLKVSFAMTINKSQGQSLKYVGVYLPQSIFSHGQLYVALSRVTSREGLKILICDDQDIEWDLQGHALMPSTCYVEFNPIATRAKFPACFTKDFGSFIGNYVILQDRERNRIQVSVKRKNCSIYFTEGWSEMGAFYGINTGGWLVILYVNPRFFRIKVLDRYGAEVAYPLKTPPHSIMLVGGGTEKSPVPIDRFVVPPTEFCHVLEKTLTSVDVESGVLTLLWNGFCEYALPKSNTDLILVDWLGHTWKCNLQFASHLPNKCQISGQWRNICKAHQLIEDCVVKFCVTEMSNNKTIHFRIASCISIRTTLIAPATSSAYKTFYQVENYFML 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34g00001 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 911 IPR027417 -
Trme34g00001 1185 CDD SF1_C_RecD 860 903 - -
Trme34g00001 1185 Gene3D - 926 1017 IPR015300 -
Trme34g00001 1185 Gene3D - 1053 1157 IPR015300 -
Trme34g00001 1185 Gene3D - 452 626 IPR027417 -
Trme34g00001 1185 PANTHER UNCHARACTERIZED 1 910 - -
Trme34g00001 1185 Pfam PIF1-like helicase 455 812 IPR010285 GO:0000723|GO:0003678|GO:0006281
Trme34g00001 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 640 IPR027417 -
Trme34g00001 1185 SUPERFAMILY DNA-binding pseudobarrel domain 937 1015 IPR015300 -
Trme34g00001 1185 FunFam ATP-dependent DNA helicase 843 908 - -
Trme34g00001 1185 SUPERFAMILY DNA-binding pseudobarrel domain 1058 1155 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34g00001 Trme-Chr34 160 5249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34g00001 934 1024 B3 DNA Binding Superfamily AT1G49475 29.670 6.64e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34g00001 - - vvo:131610966 1386.32