Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34957g00001 ATGAAACCAAATACACTTAATTTTGTGGCTGAAGTTAACTATCTGGGTCAATTCAGTAACCCAAATCTTGTGAAGCTCTTTGGATATTGCTGCGAGGATGAACACCGGTTGTTGGTCTATGAATACATGGCTAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAACGGGCTCAACATTGACTTGGTCGAAAAGAATGAAGATTGCTTTGCATGCTGCAAGAGGGCTTGCTTTTCTTCATGGGGCAGAAAGGCCCATCATATATCGTGACTTCAAGACATCAAATATCTTGCTAGATGCGGTATGTCGTCTTCTAATCTGCTAA 324 0.4198 MKPNTLNFVAEVNYLGQFSNPNLVKLFGYCCEDEHRLLVYEYMASGSLEKHLFRRTGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDAVCRLLIC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34957g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 1 107 - -
Trme34957g00001 107 PANTHER OS01G0588500 PROTEIN-RELATED 8 100 - -
Trme34957g00001 107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Trme34957g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 7 107 IPR011009 -
Trme34957g00001 107 Pfam Protein tyrosine and serine/threonine kinase 5 101 IPR001245 GO:0004672|GO:0006468
Trme34957g00001 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34957g00001 Trme-Chr34957 142 899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34957g00001 8 100 Receptor kinase-like Gene Family AT5G07280 58.333 9.30e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme34957g00001 PK_Tyr_Ser-Thr 5.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34957g00001 - - gmx:100800465 182.57