Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme348450g00001 ATGAACGAATCAACCGGTTTCTCCTTCCAGTTCTGCAACATCTCAGCAGACACTGACCTTCAACCAACCACCCAGACATACCTTGGTAGACCATGGGGTGCTTATTCGCGGACAATTTTTATGCAATCCTACTTGAGTAATGCGATAAGTCCCAAAGGGTGGATACCGTGGAACACTAGTAATTTGCATTTGGACACATTGACATATGGTGAGTTCAAGAATTTTGGACAAGGTGCTAAGGTAGCTGATCGG 252 0.4484 MNESTGFSFQFCNISADTDLQPTTQTYLGRPWGAYSRTIFMQSYLSNAISPKGWIPWNTSNLHLDTLTYGEFKNFGQGAKVADR 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme348450g00001 84 PANTHER PECTINESTERASE 2 84 - -
Trme348450g00001 84 Pfam Pectinesterase 2 84 IPR000070 GO:0030599|GO:0042545
Trme348450g00001 84 SUPERFAMILY Pectin lyase-like 2 83 IPR011050 -
Trme348450g00001 84 Gene3D - 1 84 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme348450g00001 Trme-Chr348450 9 260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme348450g00001 2 84 Carbohydrate Esterase AT3G43270 60.465 2.88e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme348450g00001 K01051 - gmx:100810815 117.472