Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34824g00001 ATGGCAATTGACCTTCTTGGACCCAGTCTGGAAGATCTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACCGTGCTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAGGTCTACATCATTGACTATGGCCTCGCCAAAAAATTCAGAGATCTTCAGACTCATAAGCACATACCATACCG 266 0.406 MAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKFRDLQTHKHIPYR 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34824g00001 89 ProSiteProfiles Protein kinase domain profile. 1 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34824g00001 89 Pfam Protein kinase domain 12 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34824g00001 89 SUPERFAMILY Protein kinase-like (PK-like) 3 88 IPR011009 -
Trme34824g00001 89 Gene3D Transferase(Phosphotransferase) domain 1 1 89 - -
Trme34824g00001 89 PANTHER CASEIN KINASE-RELATED 1 85 - -
Trme34824g00001 89 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34824g00001 Trme-Chr34824 362 888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34824g00001 16 88 MAP Kinase Kinase Kinase AT4G08500 36.842 1.35e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trme34824g00001 Pkinase 2.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34824g00001 K08960 - psat:127135985 185.267