Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34701g00001 ATGGCCGAACCAAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGACGTTGAGCTCGTTATGTATTTTCTCATGAGGAAGATTATGGGTAGAAAATTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAACCCCGCAGGAAAGAAATATTCCGTTGGAGGGAGGATGAATCGAGCGACGGAGATTGGGTACTGGAAGACTACGGGGAAAGATAGATCAATTCAACATAACAATCAACTGGTGGGGATGATAAGAACCCTGGTGTTTCACATTGGCAAAGCTCCTAAAGGAGACCGAACTGATTGGGTTATGCATGAATTCAGACTTGAAGACAAATACTTAGCTGACAAAGGCATTCCACAGGTAAACATCTTTGGCAGAGTCTATCAGTTGGTTGTGAACTGTTTTGTTGGATAA 420 0.4238 MAEPKLIPGFRFHPTDVELVMYFLMRKIMGRKFPFDVIAELDIYNPAGKKYSVGGRMNRATEIGYWKTTGKDRSIQHNNQLVGMIRTLVFHIGKAPKGDRTDWVMHEFRLEDKYLADKGIPQVNIFGRVYQLVVNCFVG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34701g00001 139 Gene3D NAC domain 15 125 IPR036093 GO:0003677|GO:0006355
Trme34701g00001 139 ProSiteProfiles NAC domain profile. 6 132 IPR003441 GO:0003677|GO:0006355
Trme34701g00001 139 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 45 - -
Trme34701g00001 139 Pfam No apical meristem (NAM) protein 49 110 IPR003441 GO:0003677|GO:0006355
Trme34701g00001 139 Pfam No apical meristem (NAM) protein 8 45 IPR003441 GO:0003677|GO:0006355
Trme34701g00001 139 SUPERFAMILY NAC domain 3 116 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34701g00001 Trme-Chr34701 431 1049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34701g00001 1 122 NAC Transcription Factor Family AT5G64060 53.793 8.10e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme34701g00001 NAM 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34701g00001 - - gmx:100781170 192.2