Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme346351g00001 AAGAGTAAGAAGAGCACCGGAGGAAAAAGAGTCCGTAAGAATGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCTGCTGAAATAAGGGACCCACAACAAGGTGTTCGTGTTTGGCTCGGTACTTTCCCGACCGCTGAAGAAGCTGCTAGAGCTTATGATGCTGCCGCCAAGCGCATCCGTGGTGACAAGGCGAAACTCAATTTCCCCGACACTCCTGCCATGTGTCCTGCCACCGCTGCTGCTG 253 0.5455 KSKKSTGGKRVRKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPDTPAMCPATAAA 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme346351g00001 84 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Trme346351g00001 84 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Trme346351g00001 84 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Trme346351g00001 84 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Trme346351g00001 84 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Trme346351g00001 84 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Trme346351g00001 84 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Trme346351g00001 84 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
Trme346351g00001 84 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Trme346351g00001 84 PANTHER DNA-BINDING DOMAIN 11 73 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme346351g00001 Trme-Chr346351 1 253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme346351g00001 8 74 AP2-EREBP Transcription Factor Family AT2G47520 83.582 1.60e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme346351g00001 AP2 8.9e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme346351g00001 K09286 - rcu:8278775 123.635