Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34623g00001 CTCTATGGTTCCAATAACCATCCCTTACCATGGAAGCAGAGACTTGAGATTCTATTGGGTGCCGCAAAAGGGCTACATTATCTTCATGCCGAGGTGAAACACAAGATAATACACCGTGACGTGAAGAGCACCAATATATTGTTGGATGAGAAATGGCTGGCTAAGGTTTCCGACTTCGGGTTATCCAAAGTGGGTCCCTCAGGGATGTCGACAACCCATGTTAGCACAATGGTAAAGGGGAGCCTTGGGTATTTAGATCCAGAGTACTATATGTTCCAAAGGCTTACTCTGAAATCTGATGTGTACTCCTTCGGTGTGGTGCTTCTTGAGGTGTTGTGTGCTCGGCCACCTTTGGTCCGCGATTTAGATAAGAAGACAGCTAGTCTAGTTTGTTGGTTTCAAAGATGTTACGATGATGGTGTGGCGATAGAACAAATAGTGGATCCACTCCTAAGGGATTCTATCACAAGTGAGTGTTTGAATTGTTATTGCAAGTTRGCGTTGAGTTGTTTGCATGATGATGGGTCTCAACGACCAACAATGAGTCAAGTGGTTGGAGATTTAGAGTTTGCGTTGAAATTGGTAGTGAGTGAAGAAGATAGCCAGGTTGGTAAGGCCCAAAAAGAGGGAAGATATATGAAAGGACCACATTTCTCGCAGTTTATGAGTGATGAGGAAAGTAATCTGCATGTCGTGAGATCCCACACTTATAAGGAGAGCACAGTCTCAGCATGGCCAAGTAGTCAAGAATATCCTTTCTCAGAGATTCAAAATCCAAGACCACGATCATATTCATGTCAAAATCTCAAAGTTTATATTTAG 822 0.4294 LYGSNNHPLPWKQRLEILLGAAKGLHYLHAEVKHKIIHRDVKSTNILLDEKWLAKVSDFGLSKVGPSGMSTTHVSTMVKGSLGYLDPEYYMFQRLTLKSDVYSFGVVLLEVLCARPPLVRDLDKKTASLVCWFQRCYDDGVAIEQIVDPLLRDSITSECLNCYCKLALSCLHDDGSQRPTMSQVVGDLEFALKLVVSEEDSQVGKAQKEGRYMKGPHFSQFMSDEESNLHVVRSHTYKESTVSAWPSSQEYPFSEIQNPRPRSYSCQNLKVYI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34623g00001 273 SMART serkin_6 2 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34623g00001 273 SUPERFAMILY Protein kinase-like (PK-like) 6 190 IPR011009 -
Trme34623g00001 273 PANTHER OS07G0166700 PROTEIN 6 194 IPR045272 GO:0004714|GO:0006468
Trme34623g00001 273 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34623g00001 273 Gene3D Transferase(Phosphotransferase) domain 1 1 211 - -
Trme34623g00001 273 FunFam Receptor-like protein kinase FERONIA 1 210 - -
Trme34623g00001 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 36 48 IPR008271 GO:0004672|GO:0006468
Trme34623g00001 273 Pfam Protein tyrosine and serine/threonine kinase 6 188 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34623g00001 Trme-Chr34623 289 1110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34623g00001 1 204 Receptor kinase-like Gene Family AT3G51550 60.294 6.07e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme34623g00001 PK_Tyr_Ser-Thr 1.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34623g00001 - - mtr:25497555 441.81