Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme346143g00001 CGTTTGAGGGGCCATCTGGACTATTACTATGCATCTGCGTGGCATCCTGAAGGGTATAAGTTCTCCACAGGGAATCAAGACAGGAGTTATCGCGTGTGGGATGCTCGGAATGTTGTACATCCTTGGTGCGTTCTCAAGGGCAATATAGGAGCGACCAATGCCATTCGTTTCAGCTCAGATGAGAAGTTTATGGCGATGGCAGAATCTGTCGATTAA 216 0.4815 RLRGHLDYYYASAWHPEGYKFSTGNQDRSYRVWDARNVVHPWCVLKGNIGATNAIRFSSDEKFMAMAESVD 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme346143g00001 71 Gene3D - 1 70 IPR015943 GO:0005515
Trme346143g00001 71 ProSiteProfiles Trp-Asp (WD) repeats profile. 2 37 IPR001680 GO:0005515
Trme346143g00001 71 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 2 37 - -
Trme346143g00001 71 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 2 71 - -
Trme346143g00001 71 SUPERFAMILY WD40 repeat-like 2 66 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme346143g00001 Trme-Chr346143 1 216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme346143g00001 9 67 U-box Gene Family AT2G33340 32.203 8.41e-06 39.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme346143g00001 - - psom:113302318 102.834