Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34613g00001 ATGTCGTCATCAAATTCACCATGTGCAGCGTGCAAGTATCTCCGACGAAAGTGCACTCAAGAATGCGATTTCGCGCCCTATTTCCTCCCCGAAAGTCCACAGCGGTTCGCAAATGTGCACCGCGTCTTCGGTGCAAGCAATGTCGCTAAGCTCTTAAAGGAGCTTAACGCGACTGACCGTGAAGACGCGGTGAAATCCCTAGCGTACGAGGCAGAGTCTCGTATAAAAGATCCGGTCTACGGCTGTGTTGGTTTGATCTCGATGCTCCAACAGCGGTTAAAAGAAATCCAACATGAGCTCCATGCGGCGAAAAAGGAGCTATCTAGTTACAATCTGAATCCTCAAACTATGCAGTACTTGTTGACTCATCCCGGAACGGTTATAAT 386 0.487 MSSSNSPCAACKYLRRKCTQECDFAPYFLPESPQRFANVHRVFGASNVAKLLKELNATDREDAVKSLAYEAESRIKDPVYGCVGLISMLQQRLKEIQHELHAAKKELSSYNLNPQTMQYLLTHPGTVI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34613g00001 128 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Trme34613g00001 128 Coils Coil 86 113 - -
Trme34613g00001 128 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
Trme34613g00001 128 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34613g00001 Trme-Chr34613 726 1111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34613g00001 1 121 AS2 family AT5G66870 69.421 7.96e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme34613g00001 LOB 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34613g00001 - - psat:127080212 221.476