Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34611g00001 AACCGGTGTGTGAATATAATAGCACATCTATTCCATGCTCCGATTGGTGAAGAGGAAACTGCCGTAGGTGTTGGAACCGTAGGGTCATCAGAGGCAATAATGTTAGCTGGTTTAGCTTTTAAAAGGAAATGGCAGACAAAGAGAAAAGCAGAAGGCAAACCTTATGATAAGCCCAACATAGTTACTGGGGCTAATGTGCAGGTTGGTCTTTAA 213 0.4272 NRCVNIIAHLFHAPIGEEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVGL 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34611g00001 70 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 68 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trme34611g00001 70 SUPERFAMILY PLP-dependent transferases 1 68 IPR015424 -
Trme34611g00001 70 Gene3D - 1 68 IPR015421 GO:0003824
Trme34611g00001 70 PANTHER GLUTAMATE DECARBOXYLASE 1 69 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34611g00001 Trme-Chr34611 208 420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34611g00001 1 68 Calmodulin-binding Proteins AT5G17330 89.706 8.27e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34611g00001 K01580 - sind:105168543 135.576