Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34584g00001 ATGGAGTCTGATCAATGTGATCAAGGTGGTGGTGGTGGTGGTGATGATCAAGATGGTTTAAAACAAGTGACCAACCTTAGGTCCTATGAGTGCAATTTTTGCAAGAGAGGTTTCTCTAATGCACAAGCACTTGGAGGACACATGAATATTCATAGGAAAGACAAAGCAAAACTCAAACAACAATCTTCAAATTTGGAGCAAGGAAATTCTAGTGATCAAGAGCTCAACAAATTATTACCAAATTTTTTGAGTTCTTCTAATATTGTGCTACCTCAAAAACAAGATCAACAACATGTCCCTTCTAGAAGTGAAGAAATTCTTGTAATTGATCACACAAGACAACAACTTCCACTTTTTTCAGAATCACCAACAAAAAATGAAATGCAAATTCAACAAGGTGGTCAAATTCATCAAAGGGAAATTACTACTACTACTGCGACGACTACTACTACACAAGAGGCTTTGTTATTATCTAATGATCAAGATTCTTCATTGGAGTTAGACCTTGAATTAAGACTAGGGTCTGAGCCTCATGATTCATCAAAGCCAACGGGTACAAGAAAATTCTTTTGA 573 0.363 MESDQCDQGGGGGGDDQDGLKQVTNLRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSNLEQGNSSDQELNKLLPNFLSSSNIVLPQKQDQQHVPSRSEEILVIDHTRQQLPLFSESPTKNEMQIQQGGQIHQREITTTTATTTTTQEALLLSNDQDSSLELDLELRLGSEPHDSSKPTGTRKFF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34584g00001 190 MobiDBLite consensus disorder prediction 1 20 - -
Trme34584g00001 190 Pfam C2H2-type zinc finger 29 53 - -
Trme34584g00001 190 Gene3D Classic Zinc Finger 18 85 - -
Trme34584g00001 190 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Trme34584g00001 190 MobiDBLite consensus disorder prediction 171 190 - -
Trme34584g00001 190 SUPERFAMILY beta-beta-alpha zinc fingers 26 56 IPR036236 -
Trme34584g00001 190 PANTHER OS07G0101800 PROTEIN 25 177 - -
Trme34584g00001 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34584g00001 Trme-Chr34584 398 970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34584g00001 27 72 C2H2 Transcription Factor Family AT3G53820 69.565 1.01e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme34584g00001 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34584g00001 - - tpra:123918605 323.939