Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme345746g00001 GACGTTGTGACTGGTTTGTCCAACATACTCCAAGAATTCGGTTTGAAATTGGATCTCAAACCCGCCTCTCGTCGTCTTCTATCTGAGGAAATTGATAATGAGGAAGGATTCCCTGCATGGGTCTCTGCTACTGATCGCAAGCTTTTGGCTCAAATGCAAGGAAAAGGATGGAGATCAAAAGTTAAGCCTAATGTTGTTGTTGCCAAGGATGGTACTGGCCAATTTAAAACAATTATGGATGCTATTAATTCTTACCCTAAAGGAAACAAAGGAAGATATATTATCTACGTTAAGGCTGGTGTCTATGACGAGTACATCACTGTC 324 0.4105 DVVTGLSNILQEFGLKLDLKPASRRLLSEEIDNEEGFPAWVSATDRKLLAQMQGKGWRSKVKPNVVVAKDGTGQFKTIMDAINSYPKGNKGRYIIYVKAGVYDEYITV 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme345746g00001 108 ProSitePatterns Pectinesterase signature 1. 89 108 IPR018040 -
Trme345746g00001 108 Pfam Pectinesterase 64 108 IPR000070 GO:0030599|GO:0042545
Trme345746g00001 108 PANTHER PECTINESTERASE 17 108 - -
Trme345746g00001 108 SUPERFAMILY Pectin lyase-like 61 108 IPR011050 -
Trme345746g00001 108 Gene3D - 16 108 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme345746g00001 Trme-Chr345746 2 325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme345746g00001 2 108 Carbohydrate Esterase AT5G49180 44.545 1.16e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme345746g00001 K01051 - gmx:100781507 157.147