Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34550g00001 ATGTGCGAAACCCTAAAAACCAAGTACCAACTCACCGAAGAAATCGGTCGCGGCCGTTTCGGCACCATCTTCCGGTGCTACCACCCTAACTCCGCCGTACCTTACGCCTGCAAAGTCATCGACAAATCTCTCCTCTCCGATTCAACCGATCGTGAGTGTCTTGAAAACGAACCGAAGTTTCTTTCTCTTCTTTCACCTCACCCTAACGTTCTTCAAATCTTCGACGTTTTCGAAAACGACGATTTCTTATCAATCGTTTTAGAGCTTTGTCAACCTCTAACTCTTCTCGATCGTATCGTTTCAAATCCTTTCTCTGAACAACAAGCTTCTTCTCTCATCAAGAAGCTTCTAGAAGCCGTTGTTCACTGTCACCGTCTCGGTGTTGCTCACCGTGATATTAAACCGGATAACATTCTCTTCGATTCTGATGATAATCT 437 0.4485 MCETLKTKYQLTEEIGRGRFGTIFRCYHPNSAVPYACKVIDKSLLSDSTDRECLENEPKFLSLLSPHPNVLQIFDVFENDDFLSIVLELCQPLTLLDRIVSNPFSEQQASSLIKKLLEAVVHCHRLGVAHRDIKPDNILFDSDDNL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34550g00001 146 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trme34550g00001 146 SMART serkin_6 9 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34550g00001 146 Gene3D Transferase(Phosphotransferase) domain 1 2 146 - -
Trme34550g00001 146 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Trme34550g00001 146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Trme34550g00001 146 ProSiteProfiles Protein kinase domain profile. 9 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34550g00001 146 Pfam Protein kinase domain 9 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34550g00001 146 SUPERFAMILY Protein kinase-like (PK-like) 5 145 IPR011009 -
Trme34550g00001 146 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34550g00001 Trme-Chr34550 1 437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34550g00001 5 142 EF-hand Containing Proteins AT4G09570 45.324 1.98e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme34550g00001 Pkinase 7.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34550g00001 - K08794 gmx:548089 239.58