Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme345418g00001 GCTTTTGTTGGCTACAAGTCTGGGATGACCCATATAGTTAGGGAGGTCGAGAAACCTGGATCAGAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATAATTGAAGCTCCTCTAGTTGTTGTTGTTGTTGGATTGGTGGAATATGTGAAGACACCATGA 162 0.4259 AFVGYKSGMTHIVREVEKPGSELHKKETCEAVTIIEAPLVVVVVGLVEYVKTP 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme345418g00001 53 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 53 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trme345418g00001 53 Pfam Ribosomal protein L3 1 53 IPR000597 GO:0003735|GO:0005840|GO:0006412
Trme345418g00001 53 Gene3D - 39 53 - -
Trme345418g00001 53 FunFam 60S ribosomal protein L3 1 52 - -
Trme345418g00001 53 SUPERFAMILY Translation proteins 1 43 IPR009000 -
Trme345418g00001 53 Gene3D Translation factors 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme345418g00001 Trme-Chr345418 1 287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme345418g00001 1 40 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.000 9.39e-19 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme345418g00001 K02925 - zof:121969276 87.0409