Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3453g00001 ACTCTTAGTTCATATGCTGGAGTTTCCGTTTTCTGGGACGGTGAGAGGCACAGAAGTGGAGATCAAGAAATATCAACCTCATCTCTGAATGTAATTGGAGACTGTAGAGTTGCTGTAATCGTATTTTCAAGAAATTATGCAAATTCAAGATATTGTCTTCGAGAATGGGAAAAAATAACCGAATATAGCCGAACCACAACCGGTCTTAATGTTCTGTTTGTGTTCTATGATGGTGTTTATCCCTGTGATGGAAGATTACGGAGTGGTATGTTTGGAGAGGCTTTTCATAATTTAGTGGATAGAATCTGTAAAGAAGAAATCTCTCAAGAGGGGGATAAATTCATGAGTTGGGTGGAAGCTATCAGTAATAAAGCTTTAAAATATTCAGGATCAAGATATTCAGAACGCAAATCCTTATACAGGAATGAAAGTGAATATATTAGCAATGTAGTTGAACGCGTTACTCATGTGCTTCACAAGAAGCGAGACTTGTTCAGTGCTTCCTATACAGCGAGTGTAAAATCTGGTGTGCAAGATGATAAGAGCTTCATAGATGTCAGCACTGTTCGGGGAAAAAGTGATCTTCAAGTGCTTTTACAAGACGATCTTTCTTTTGATATTGGTAAGGAAACTGAAAAAAACGTACCTACAGTTGAATCAAGAAAAGTGATATTAGAACAGAGTCTTCAACATAAAAGGGTACTTCTTATACTTGACAATGTTGATAAATTGGAGCAGCTAGATGCTTTATGTGGTAGTCGTAAATGGTTCGGGGAAGGTAGCAAAATAATCATCATGACAAGAGATAGGCATCTACTTAAGGAGCACGGAGTTAACCATATATATAGAGTGAAAGAACTGGACGAAAGTGAATCGCGTAAGCTTTTTAATTTTGATGCATTCAGCCAAGAAGCAACTCCTGGAGAAAATTTTAGTGAACTTGCTAGACAGTACTTGAGTGGAAAGGTGTGTTGA 975 0.3764 TLSSYAGVSVFWDGERHRSGDQEISTSSLNVIGDCRVAVIVFSRNYANSRYCLREWEKITEYSRTTTGLNVLFVFYDGVYPCDGRLRSGMFGEAFHNLVDRICKEEISQEGDKFMSWVEAISNKALKYSGSRYSERKSLYRNESEYISNVVERVTHVLHKKRDLFSASYTASVKSGVQDDKSFIDVSTVRGKSDLQVLLQDDLSFDIGKETEKNVPTVESRKVILEQSLQHKRVLLILDNVDKLEQLDALCGSRKWFGEGSKIIIMTRDRHLLKEHGVNHIYRVKELDESESRKLFNFDAFSQEATPGENFSELARQYLSGKVC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3453g00001 324 Gene3D - 2 158 IPR035897 -
Trme3453g00001 324 ProSiteProfiles TIR domain profile. 1 115 IPR000157 GO:0007165
Trme3453g00001 324 Pfam TIR domain 6 157 IPR000157 GO:0007165
Trme3453g00001 324 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 121 IPR035897 -
Trme3453g00001 324 SMART till_3 4 124 IPR000157 GO:0007165
Trme3453g00001 324 Pfam NB-ARC domain 198 317 IPR002182 GO:0043531
Trme3453g00001 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 317 IPR027417 -
Trme3453g00001 324 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 318 IPR044974 GO:0006952
Trme3453g00001 324 Gene3D - 159 282 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3453g00001 Trme-Chr3453 56 2396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3453g00001 225 297 WRKY Transcription Factor Family AT4G12020 38.356 2.38e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3453g00001 - - mtr:11411578 288.115