Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3444g00001 ATGACCCAACCAAGGCACCCAAGCTTACTGCCTTCTTGGGTTACAAGGCTGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCAGCAAGTACTCCAAGCAGTATGAAAGTGATGAAGGAAAGAAAAACATTCAGACACAGCTTGAGAAACTGAAGAAGTATTCAACTGTTATCCGTGTCTTGGCTCACACTCAGATCAGGAAAATGAAGGGATTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGCGGTACTATTGCCCAGAAGGTGGACTTTGCATACAATTTCTTTGAGAAACAGGTTCCTATTGATGCTGTCTTCCAGAAGGATGAAATGATTGACATCATTGGAGTGACAAAAGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACTCGTCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCTAGAGTTTCTTTCACTGTTGCTAGGGCTGGTCAGAACGGTTACCATCACAGAACTGAGCTGAACAAGAAAATTTACAAGCTCGGCAAAACTGGAGAAGAGTCCCATGATGCCCAGACTGAGTTTGATAGGACTGAGAAAGACATCACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTGAAGGAGGATTATCTGATGATCAAGGGAGGCGTTGTTGGTCCCAAGAAGAGGGTTGTTACATTGCGTCAGTCCCTTCTCAAGCAGACTTCCCGTCTTGCATTGGAAGTTATCGTACCCAAGTTTATTGATACCTCTTCTAAGTTCGGCCATGGTCGTTTCCAGACAACTCAAGAGAA 866 0.4469 MTQPRHPSLLPSWVTRLHLSEEIKRRFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYSTVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKTGEESHDAQTEFDRTEKDITPMGGFPHYGVVKEDYLMIKGGVVGPKKRVVTLRQSLLKQTSRLALEVIVPKFIDTSSKFGHGRFQTTQE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3444g00001 288 Gene3D - 10 115 - -
Trme3444g00001 288 Gene3D Translation factors 161 288 - -
Trme3444g00001 288 SUPERFAMILY Translation proteins 14 279 IPR009000 -
Trme3444g00001 288 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 16 288 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trme3444g00001 288 ProSitePatterns Ribosomal protein L3 signature. 121 144 IPR019926 -
Trme3444g00001 288 FunFam Ribosomal protein L3 174 288 - -
Trme3444g00001 288 Pfam Ribosomal protein L3 18 279 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3444g00001 Trme-Chr3444 1 2020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3444g00001 8 288 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 83.630 6.68e-177 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3444g00001 K02925 - jre:108984237 486.108