Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34417g00001 ATGGCGGAGGAGGAAGAGAAGTTGCTTAAAGCTCGTGCTAAGGAAGAAGAGGAACCGTGTGAGGAGGCGCCGAATCTTAATGATACACAGTTTAATAAGTTAGATGAGCTCTTAACACAAACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGACGATATCACAATGAATCCGAGTGAACAAGAGAATGAGGACGAGGAAGAGAGCCAGCCGAGTGTGAAAAAGAAGGGTCGTGGAGCAAAACGAAAGGCGGCTAAACAATGCAATACTAGGAAAGCTAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAATCTGAAGACTGAAGATGTGAATTTGACTGAAGAAGAAAGAACTGAGAAAGAGCAGAAGGAGCTGATGCCTTTACTAACTGGTGGAAAATTGAAGTCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTAGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGCTTTATTTCTCATCTAAAATCAAAAGGATTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTCTCCAATTGGGTGAATGAGATTTCTAG 620 0.4065 MAEEEEKLLKARAKEEEEPCEEAPNLNDTQFNKLDELLTQTKLYSEFLLEKMDDITMNPSEQENEDEEESQPSVKKKGRGAKRKAAKQCNTRKAKKAVEAMITRSKENLKTEDVNLTEEERTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFISHLKSKGLDGPYMIIAPLSTLSNWVNEIS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34417g00001 206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 206 IPR014001 -
Trme34417g00001 206 MobiDBLite consensus disorder prediction 1 31 - -
Trme34417g00001 206 MobiDBLite consensus disorder prediction 1 20 - -
Trme34417g00001 206 Pfam SNF2-related domain 141 205 IPR000330 GO:0005524|GO:0140658
Trme34417g00001 206 MobiDBLite consensus disorder prediction 53 94 - -
Trme34417g00001 206 MobiDBLite consensus disorder prediction 77 91 - -
Trme34417g00001 206 Gene3D - 107 206 IPR038718 -
Trme34417g00001 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 205 IPR027417 -
Trme34417g00001 206 PANTHER SNF2/RAD54 HELICASE FAMILY 13 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34417g00001 Trme-Chr34417 31 1035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34417g00001 111 206 RAD5 or RAD16-like Gene Family AT1G05120 33.945 9.95e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme34417g00001 SNF2_N 5.3e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34417g00001 K19001 - gmx:100817842 308.145