Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme343g00001 CAACAATATGCAGTGATTGAAAAGATTGTTGAAGAGGTAATAAAGATATTGGATTTTGGTCGCAAAATTTCAAGTGCTCCAATTGATTTAGGTATTGAAGAATTGAAAAAATGTTTACTTTTAGACTCTGTTAAGGACGTTCGGGCTGTAGGAATTTGTGGTATGGATGGAATAGGGAAGACAACTCTTGCTACTATTTTATATGAAAAAATCTCTCACCAATTCGATGCATGCTGTTTTATGGTTGATGTGAGCAAAACTTACAAACAATATGGTCCAATTGGTGTACAAAAGAAAATTCTGCATCAAACTCTAGGCAAAGAGTACAATCTTTATGATGAAACTGATTCAGTACAAAGTAGGCTATGTCAATTTAGGGCTCTTATAATTTTAGATAATGTTGATCACAGCGACCAATTGGAGAAACTAGCAGTGACTCGTAAATCGCTAGCTCCAGGGAGTAAAATCATTATAGTTTGTAGAGATGCACATATCTTGAAAGAGTATGGAGTTGATGCAGTTTACCAAGTTCCACTCTTGAATGAGAAAAACTCTCTCCAATTATTTCGTAGAATTGCTTTCAAACGGGATAGTAATATCAGTAATTTCGTGGAGTTGGCACATGAAGTATTGAAGTATGCTAATGGCCTACCACTAGCAATTGAAGTGTTACGTTCTTCCTTGTCCTGTCAAAGTGTATCTGAATGGAAATTTGAATTGAATAAACTGGGAGAAAGTCCAAACAAAGATATCATGGATACACTTCAGTTTTGTTTTAACGGGCTAGAGGAAAGGGAAAAAGAAATATTTCTTCATATTGCTTGTTTTTTCAACCAGCGTGAGCAGAATTATGTTAAAAATGTTCTGAACTGTTGTGGATTTGATGCTGATTTTGGATTAGCTGTTCTCATTGATAAATCATTCGTAATCATTTCAGATGAAAGTAAGATTGTAATGCATGCTTTATTGGAAGAGCTAGGCAGAAAAATTGTTCATGAAATGTCAAGAAAGTGGAGCAAGTTGTGGTTGCACGAACAATTCTACAATGTTGTGTTGGAGAATATGAATCTGCCCAATTTGAGGATTCTGGATCTAAGCCACTCTGAAAATCTAACCAAGATGCCAGATTTTGGAGAGTTCCCAAATCTTAAGCAGCTAAATCTTGAAGGATGTGTAAAACTTGTGCAGATAGATTCATCTATTGGTCTTCTAAGAGAGCTTGTTTTCTTGAATTTGAAGAATTGTGAAAACCTTATATGCATACCCAACGAAATATCTGGTCTCACCTCTCTTAAATATTTAAACCTTTGCGGTTGTTCCAAAGCGTTTAACAATCCTAAAGCGCGTGAAGATTTTTCTAGTTGTGTGTTGCCATCCTTGCCTAGTTTCTCTTGTTTGAGTGAACTTGATATCAGTTTTTGCAGTCTTAGCCAAATCCCTGACGCTCTTGGATGTCTAACTTGGTTAGAAAGATTAAATTTAAGGGGAAACAATTTTGTCACATTGCCTAACCTCCGGGATCTTTCCAAACTTGAATACTTAAATTTGGAGCATTGCAAGCAGTTGACATCTTTGCCTGAGCTCCCTTCACCTGCCGCTATCAAGAAGGATAAACATAAGAGAGTAGGAATGTATATTTTCAACTGTCCTGAATTGGGTGAGAGGGAACATTGCACTAGCATGACTTTTTCATGGATGACAAATTTCATTCAATCAAACCAAGATTCTTCCTCCTCCTTTCATCAGATTGATATTGTTATTCCTGGAAGTGAAATTCCAAGTTGGTTCAACAATCGGAGAATGGGTAGATCAATAAGCATAGACCCATCTCCCATTGTGTATGACGATAATATCATTGGAATTGCTTGTTGTGCCATATTTTCTGTGGAACCTTTTGATCCAACTAAGACAAGATATGAATGGGGACCTGTAATACGGTTAGGTTTTAAGAGCAGAAATGCTGCCAACGGCAATTATGTTGTCATTCCAGTAACTCTCTATAGACATCTTCTTACGGTGAAATCAAATCACATGTGGCAAGTCTATTTTGATCGGGAATCATTCTTCAGTTTTCTGAGATCTATAGACAATACACTATGGGAACTTGATCATATTGTAATGCAAGCTTCCGTTACGAATGGCCAAGGCTTGCATCTGGAGAATGAGGAAACTCTTGTGCTCCAACCTACAACTCTTATGGTGATTGAAGATGAGGCACAGCCACAATAG 2229 0.3701 QQYAVIEKIVEEVIKILDFGRKISSAPIDLGIEELKKCLLLDSVKDVRAVGICGMDGIGKTTLATILYEKISHQFDACCFMVDVSKTYKQYGPIGVQKKILHQTLGKEYNLYDETDSVQSRLCQFRALIILDNVDHSDQLEKLAVTRKSLAPGSKIIIVCRDAHILKEYGVDAVYQVPLLNEKNSLQLFRRIAFKRDSNISNFVELAHEVLKYANGLPLAIEVLRSSLSCQSVSEWKFELNKLGESPNKDIMDTLQFCFNGLEEREKEIFLHIACFFNQREQNYVKNVLNCCGFDADFGLAVLIDKSFVIISDESKIVMHALLEELGRKIVHEMSRKWSKLWLHEQFYNVVLENMNLPNLRILDLSHSENLTKMPDFGEFPNLKQLNLEGCVKLVQIDSSIGLLRELVFLNLKNCENLICIPNEISGLTSLKYLNLCGCSKAFNNPKAREDFSSCVLPSLPSFSCLSELDISFCSLSQIPDALGCLTWLERLNLRGNNFVTLPNLRDLSKLEYLNLEHCKQLTSLPELPSPAAIKKDKHKRVGMYIFNCPELGEREHCTSMTFSWMTNFIQSNQDSSSSFHQIDIVIPGSEIPSWFNNRRMGRSISIDPSPIVYDDNIIGIACCAIFSVEPFDPTKTRYEWGPVIRLGFKSRNAANGNYVVIPVTLYRHLLTVKSNHMWQVYFDRESFFSFLRSIDNTLWELDHIVMQASVTNGQGLHLENEETLVLQPTTLMVIEDEAQPQ 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme343g00001 742 ProSiteProfiles Leucine-rich repeat profile. 488 509 IPR001611 GO:0005515
Trme343g00001 742 Pfam C-JID domain 587 689 IPR045344 -
Trme343g00001 742 Gene3D Ribonuclease Inhibitor 452 576 IPR032675 -
Trme343g00001 742 Gene3D Ribonuclease Inhibitor 338 451 IPR032675 -
Trme343g00001 742 Pfam NB-ARC domain 33 249 IPR002182 GO:0043531
Trme343g00001 742 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 356 442 IPR044974 GO:0006952
Trme343g00001 742 Gene3D - 179 263 IPR042197 -
Trme343g00001 742 PRINTS Disease resistance protein signature 49 64 - -
Trme343g00001 742 PRINTS Disease resistance protein signature 121 135 - -
Trme343g00001 742 PRINTS Disease resistance protein signature 214 228 - -
Trme343g00001 742 PRINTS Disease resistance protein signature 355 371 - -
Trme343g00001 742 SUPERFAMILY "Winged helix" DNA-binding domain 250 350 IPR036390 -
Trme343g00001 742 SUPERFAMILY L domain-like 354 529 - -
Trme343g00001 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 273 IPR027417 -
Trme343g00001 742 Gene3D - 29 174 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme343g00001 Trme-Chr343 638 3445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme343g00001 356 529 WRKY Transcription Factor Family AT5G45050 29.101 1.66e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme343g00001 - - mtr:11441353 641.728