Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34361g00001 GCTTATTTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTAATGCCAAAGGATACTTTAAAATAAATAATGTTGTGCCAGGTGATTATAATTTGTATGGTTGGGTCCCTGGATTTATTGGTGATTACAAATATAATGGTACAATCACCATCACACCAGGAGGAATCATAAACTTAAATTCACTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGATCCCAGATCGTTTAGCTTCGGAATTTCATGTACCTGATCCATACCCTAGTCTCATGAACAAATTATACGTCGAACAACGCAAAGACAAGTTAGTCCAAAACTCTGTTATCAAAAGCTATTATTTTTAA 399 0.3759 AYLGLALPGDAGSWQRESKGYQFWTQANAKGYFKINNVVPGDYNLYGWVPGFIGDYKYNGTITITPGGIINLNSLVYNPPRNGPTIWEIGIPDRLASEFHVPDPYPSLMNKLYVEQRKDKLVQNSVIKSYYF 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34361g00001 132 SUPERFAMILY Starch-binding domain-like 19 74 IPR013784 GO:0030246
Trme34361g00001 132 Pfam Polysaccharide lyase family 4, domain II 2 70 IPR029413 -
Trme34361g00001 132 Gene3D - 5 74 - -
Trme34361g00001 132 CDD RGL4_M 1 75 IPR029413 -
Trme34361g00001 132 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34361g00001 Trme-Chr34361 2 570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34361g00001 1 130 Polysaccharide Lyase AT4G38030 56.923 9.01e-49 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34361g00001 K18195 - gmx:100776664 211.46