Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34340g00001 GATTATGATGGAAGACCGTTGACTGTTAACGTAGCTTCTCCGAGAGGATCTCGGCCTGAGCGTATTGAGCGTCAACCTCGTACTTTTGAACCTGTCATAAGAGTTTATGTTGGTAACTTGGCATGGGAAGTTGATGATGCTAAGCTTGAACAAATTTTCAGTGAACATGGTAAGGTTGTCAGAGCTCAAGTAATCTATGATAGGGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAAACGGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGATGGTAGGACAATAAGAGTGAGTGTTGCTGAAGACAGGCCCAGGCGTAACTCTTTTTGA 357 0.4426 DYDGRPLTVNVASPRGSRPERIERQPRTFEPVIRVYVGNLAWEVDDAKLEQIFSEHGKVVRAQVIYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRTIRVSVAEDRPRRNSF 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34340g00001 118 SUPERFAMILY RNA-binding domain, RBD 3 116 IPR035979 GO:0003676
Trme34340g00001 118 PANTHER OS02G0815200 PROTEIN 1 114 - -
Trme34340g00001 118 CDD RRM2_NsCP33_like 34 109 - -
Trme34340g00001 118 FunFam 31 kDa ribonucleoprotein, chloroplastic 23 117 - -
Trme34340g00001 118 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Trme34340g00001 118 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Trme34340g00001 118 SMART rrm1_1 34 107 IPR000504 GO:0003723
Trme34340g00001 118 Gene3D - 13 117 IPR012677 -
Trme34340g00001 118 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34340g00001 Trme-Chr34340 444 953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34340g00001 35 115 Eukaryotic Initiation Factors Gene Family AT3G16380 40.741 7.13e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34340g00001 - - tpra:123897635 224.172