Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34300g00001 TCACTCAACAACGTTGATTTGTCGAGAAATTTACTTTCCGATGAAATTCCGGCGAGTTTAGGTTTGTTGCCAGCTTTGAATTCTCTTAATTTCTCTCGGAATGAACTTTCTGGTGAAATTCCGGAGAGTTTAGGTTCGCTTAAGTTGAGTCTGTTTGATCTTTCGCATAATCGATTATCTGGTAAAATTCCACAAGCTTTGACTATTCAAGCTTACAACGGAAGNNNNNNNGGAAATCCACGTTTGTGCACGCTTGACGCTATTGGTTCTTTCCGGCGTTGTTCTGAGAGAAATGGAATGTCAAAAGACGTTCGTGCCCTTTTACTTTGTTTCATAGTAGCTTTGGTTTTGGTTCTTTGTTTTTTGGGTGTTTATTTGAAATTGAAGAAAATGAAGGGAAAAGAGGAAAAAAGAGAGGGAAATAAATATGGAAGAGAACGTTCTTTGAAGGAAGAATCATGGGATGTGAAATCGTTCCACGTATTGAGTTTTAGTGAAGATGAGATTCTTGATTCTGTTAAGCAAGAGAATCTAATAGGAAAAGGAGGTTCAGGGAATGTTTATAGAGTCACACTTGCAAATGGAAAAGAACTCGCGGTTAAGCATATATGGAACACTGATTTCGGGTCAAGGAAAAAGTCGTGGAGCAGCACGCCGATGTTGGCGAAGCGCGTTGGTGGTGGTAGTTCAAGGTCAAAGGAATTTGACGCTGAGGTTCAGGCGTTGAGTTCAATAAGACATGTGAATGTGGTGAAGCTTTATTGTAGTATAACTAGTGAGGATTCAAGTCTTTTGGTTTATGAGTATTTGCCTAATGGAAGTTTGTGGGATAGGCTTCATACTAATGGAAAGATAGAGCTTGATTGGGAAACAAGATATGAAATTGCTGTTGGTGCTGCTAAAGGGTTGGAGTATTTGCATCATGGGTGTGAAAGGCCTGTGATTCATAGAGATGTTAAGTCTAGTAATATTTTGTTGGATGAGTTTTTGAAACCTAGGATTGCTGATTTTGGTCTTGCTAAGATTGTTAATGCTAATGCTATTAAGGATTCTACTCATATCATTGCCGGTACTCACGGCTACATTGCTCCCGGTAAGTAA 1101 0.3906 SLNNVDLSRNLLSDEIPASLGLLPALNSLNFSRNELSGEIPESLGSLKLSLFDLSHNRLSGKIPQALTIQAYNGXXXGNPRLCTLDAIGSFRRCSERNGMSKDVRALLLCFIVALVLVLCFLGVYLKLKKMKGKEEKREGNKYGRERSLKEESWDVKSFHVLSFSEDEILDSVKQENLIGKGGSGNVYRVTLANGKELAVKHIWNTDFGSRKKSWSSTPMLAKRVGGGSSRSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTNGKIELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVNANAIKDSTHIIAGTHGYIAPGK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34300g00001 366 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 364 - -
Trme34300g00001 366 Gene3D Transferase(Phosphotransferase) domain 1 160 365 - -
Trme34300g00001 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Trme34300g00001 366 FunFam Protein kinase superfamily protein 270 342 - -
Trme34300g00001 366 Pfam Protein kinase domain 175 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34300g00001 366 ProSiteProfiles Protein kinase domain profile. 173 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34300g00001 366 SMART serkin_6 173 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme34300g00001 366 ProSitePatterns Protein kinases ATP-binding region signature. 179 201 IPR017441 GO:0005524
Trme34300g00001 366 SUPERFAMILY L domain-like 2 67 - -
Trme34300g00001 366 Gene3D Ribonuclease Inhibitor 1 101 IPR032675 -
Trme34300g00001 366 SUPERFAMILY Protein kinase-like (PK-like) 165 364 IPR011009 -
Trme34300g00001 366 FunFam Receptor-like protein kinase HAIKU2 156 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34300g00001 Trme-Chr34300 3 1103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34300g00001 2 366 Receptor kinase-like Gene Family AT1G09970 61.202 2.00e-134 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme34300g00001 Pkinase 7.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34300g00001 - - gmx:100809356 554.288