Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme34290g00001 ATGGAATCCGGGCTTGTAGTTGTTGTTCCTGTCAAAGAAATCAAATCAAGCCCTTGGGCTTTTCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGCGCCTTTTTTCTTTTTGTCGGAGCTGTTGTATGGATTCTTGAGCACAGACACAATCCTGAGTTCCGAGGTCCACCGAAGAAGCAACTTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGCGGTCTTGGGCGATTCGTGCTAATCATATGGCTTTTTGTAGTATTAATTATCAATTCAAGCTACACGGCAAGCTTAACATCCATCCTCACAGTGCAGCAACTATCCTCACAAATTGAAGGAATTGATAGCTTGATATCAGGTACTCAACCGATTGGAATTCAAGACGGGTCATTTGCAAGGAGATATCTGATAGATGAACTCAATATACATCCATCTAGGATAGTTTCATTGAAAGATCCAAAGGCGTATGTCGATGCCCTTACGCGTGGACCAAAAGGCGGAGGAGTTGTGGCTATTGTTGATGAGCTTCCTTATATTGAAATCTTTATGTCTAGTACCAACTGCAAGTTCAGAACTGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTTGTAAGT 651 0.4178 MESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQLMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARRYLIDELNIHPSRIVSLKDPKAYVDALTRGPKGGGVVAIVDELPYIEIFMSSTNCKFRTVGQEFTKSGWGFVS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme34290g00001 217 Pfam Ligand-gated ion channel 27 199 IPR001320 GO:0015276|GO:0016020
Trme34290g00001 217 FunFam Glutamate receptor 177 213 - -
Trme34290g00001 217 FunFam Glutamate receptor 18 148 - -
Trme34290g00001 217 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 215 IPR015683 -
Trme34290g00001 217 SUPERFAMILY Periplasmic binding protein-like II 1 216 - -
Trme34290g00001 217 Gene3D - 14 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme34290g00001 Trme-Chr34290 1 827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme34290g00001 1 216 Ion Channels AT1G05200 77.778 6.07e-122 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme34290g00001 K05387 - gmx:100799912 390.963